Variant report
| Variant | rs9885892 |
|---|---|
| Chromosome Location | chr6:119403038-119403039 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ZNF263 | chr6:119402816-119403203 | HEK293-T-REx | kidney: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| FAM184A | TF binding region |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs1288527 | 1.00[EUR][1000 genomes] |
| rs1334921 | 1.00[EUR][1000 genomes] |
| rs1334923 | 1.00[EUR][1000 genomes] |
| rs1413907 | 1.00[EUR][1000 genomes] |
| rs1762192 | 1.00[EUR][1000 genomes] |
| rs2184457 | 1.00[EUR][1000 genomes] |
| rs2797353 | 1.00[EUR][1000 genomes] |
| rs2797354 | 1.00[EUR][1000 genomes] |
| rs2797362 | 1.00[EUR][1000 genomes] |
| rs4335018 | 0.85[AFR][1000 genomes] |
| rs586708 | 1.00[EUR][1000 genomes] |
| rs59123354 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60554369 | 1.00[EUR][1000 genomes] |
| rs607092 | 1.00[EUR][1000 genomes] |
| rs608435 | 1.00[EUR][1000 genomes] |
| rs617874 | 1.00[EUR][1000 genomes] |
| rs637322 | 1.00[EUR][1000 genomes] |
| rs651781 | 1.00[EUR][1000 genomes] |
| rs659411 | 1.00[EUR][1000 genomes] |
| rs660068 | 1.00[EUR][1000 genomes] |
| rs673507 | 1.00[EUR][1000 genomes] |
| rs6903032 | 1.00[EUR][1000 genomes] |
| rs6907441 | 1.00[EUR][1000 genomes] |
| rs6924394 | 1.00[EUR][1000 genomes] |
| rs73519453 | 1.00[EUR][1000 genomes] |
| rs73519455 | 1.00[EUR][1000 genomes] |
| rs73521373 | 1.00[EUR][1000 genomes] |
| rs73521381 | 1.00[EUR][1000 genomes] |
| rs73523318 | 1.00[EUR][1000 genomes] |
| rs73523320 | 1.00[EUR][1000 genomes] |
| rs73523339 | 1.00[EUR][1000 genomes] |
| rs73523343 | 1.00[EUR][1000 genomes] |
| rs73523351 | 1.00[EUR][1000 genomes] |
| rs73523361 | 1.00[EUR][1000 genomes] |
| rs73523365 | 1.00[EUR][1000 genomes] |
| rs73531378 | 0.95[AFR][1000 genomes] |
| rs73533310 | 0.81[AFR][1000 genomes] |
| rs794256 | 1.00[EUR][1000 genomes] |
| rs794265 | 1.00[EUR][1000 genomes] |
| rs807807 | 1.00[EUR][1000 genomes] |
| rs9401100 | 1.00[EUR][1000 genomes] |
| rs9489587 | 0.90[AFR][1000 genomes] |
| rs9489589 | 0.81[AFR][1000 genomes] |
| rs9885891 | 0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030400 | chr6:119320153-119433830 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionmiRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:119402200-119403200 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr6:119402800-119403200 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
