Variant report

Variant	rs617874
Chromosome Location	chr6:119374841-119374842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119374505..119375317-chr8:134874073..134874573,2	K562	blood:
2	chr6:119374401..119377359-chr6:119388791..119390597,2	K562	blood:

Variant related genes	Relation type
ENSG00000207982	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1288527	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320445	0.87[AMR][1000 genomes]
rs1334921	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334923	1.00[EUR][1000 genomes]
rs1413907	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1762192	1.00[EUR][1000 genomes]
rs2184457	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797353	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797354	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586708	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59123354	1.00[EUR][1000 genomes]
rs60554369	1.00[EUR][1000 genomes]
rs607092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs608435	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs637322	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs651781	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs659411	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs673507	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903032	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907441	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924394	1.00[EUR][1000 genomes]
rs73519453	1.00[EUR][1000 genomes]
rs73519455	1.00[EUR][1000 genomes]
rs73521373	1.00[EUR][1000 genomes]
rs73521381	1.00[EUR][1000 genomes]
rs73523318	1.00[EUR][1000 genomes]
rs73523320	1.00[EUR][1000 genomes]
rs73523339	1.00[EUR][1000 genomes]
rs73523343	1.00[EUR][1000 genomes]
rs73523351	1.00[EUR][1000 genomes]
rs73523361	1.00[EUR][1000 genomes]
rs73523365	1.00[EUR][1000 genomes]
rs73531317	0.87[AMR][1000 genomes]
rs73531372	0.87[AMR][1000 genomes]
rs73531400	0.87[AMR][1000 genomes]
rs73533313	0.87[AMR][1000 genomes]
rs73533322	0.87[AMR][1000 genomes]
rs73533335	0.87[AMR][1000 genomes]
rs794256	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs794265	1.00[EUR][1000 genomes]
rs807807	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9401100	1.00[EUR][1000 genomes]
rs9885892	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119373000-119375800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:119373200-119375000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:119373400-119375200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:119373400-119375800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:119373600-119375200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:119373600-119375800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:119374400-119375000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:119374800-119375400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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