Variant report

Variant	rs1413907
Chromosome Location	chr6:119332773-119332774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119326862..119329633-chr6:119330322..119332791,2	K562	blood:
2	chr6:119330295..119333330-chr6:119397453..119401134,3	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1288527	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334921	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334923	1.00[EUR][1000 genomes]
rs1762192	1.00[EUR][1000 genomes]
rs2184457	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2638540	1.00[EUR][1000 genomes]
rs2797353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797362	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586708	1.00[EUR][1000 genomes]
rs59123354	1.00[EUR][1000 genomes]
rs59547233	1.00[EUR][1000 genomes]
rs60554369	1.00[EUR][1000 genomes]
rs607092	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs608435	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs617874	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs637322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs651781	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs659411	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660068	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs673507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903032	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907441	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924394	1.00[EUR][1000 genomes]
rs73519448	1.00[EUR][1000 genomes]
rs73519453	1.00[EUR][1000 genomes]
rs73519455	1.00[EUR][1000 genomes]
rs73521373	1.00[EUR][1000 genomes]
rs73521381	1.00[EUR][1000 genomes]
rs73523318	1.00[EUR][1000 genomes]
rs73523320	1.00[EUR][1000 genomes]
rs73523339	1.00[EUR][1000 genomes]
rs73523343	1.00[EUR][1000 genomes]
rs73523351	1.00[EUR][1000 genomes]
rs73523361	1.00[EUR][1000 genomes]
rs73523365	1.00[EUR][1000 genomes]
rs73523382	0.92[AFR][1000 genomes]
rs794256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs794265	1.00[EUR][1000 genomes]
rs807807	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9401100	1.00[EUR][1000 genomes]
rs9885892	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
2	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:119293200-119345400	Weak transcription	Lung	lung
4	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
6	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:119318600-119344200	Weak transcription	Fetal Lung	lung
8	chr6:119319600-119333600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:119319800-119342600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:119322600-119337800	Weak transcription	Placenta	Placenta
11	chr6:119324400-119333000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:119325200-119339800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:119328600-119348800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:119329200-119343400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:119329800-119333800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:119330200-119342400	Weak transcription	Liver	Liver
18	chr6:119330400-119347000	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:119330800-119342800	Weak transcription	Fetal Intestine Small	intestine
20	chr6:119331000-119336200	Weak transcription	Fetal Intestine Large	intestine
21	chr6:119331000-119337600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:119331000-119344200	Weak transcription	Gastric	stomach
23	chr6:119331000-119344400	Weak transcription	Fetal Brain Female	brain
24	chr6:119331200-119336200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:119331200-119340600	Weak transcription	Left Ventricle	heart
26	chr6:119331400-119334400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:119331400-119336400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:119331400-119338800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:119331400-119345200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:119331400-119345800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:119331400-119349800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:119331400-119356000	Weak transcription	Ovary	ovary
33	chr6:119331600-119336200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:119331600-119336400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:119331600-119337200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:119331600-119337800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:119331600-119341600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:119331600-119349200	Weak transcription	Adipose Nuclei	Adipose
39	chr6:119331600-119355800	Weak transcription	K562	blood
40	chr6:119332400-119336200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:119332400-119344200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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