Variant report

Variant	rs1288527
Chromosome Location	chr6:119364356-119364357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119363262..119365656-chr6:119366667..119368458,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1320445	0.87[AMR][1000 genomes]
rs1334921	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334923	1.00[EUR][1000 genomes]
rs1413907	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1762192	1.00[EUR][1000 genomes]
rs2000111	1.00[TSI][hapmap]
rs2184457	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797353	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797354	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586708	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59123354	1.00[EUR][1000 genomes]
rs60554369	1.00[EUR][1000 genomes]
rs607092	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs608435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs617874	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs637322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs651781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs659411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs673507	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903032	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907441	0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924394	1.00[EUR][1000 genomes]
rs73519453	1.00[EUR][1000 genomes]
rs73519455	1.00[EUR][1000 genomes]
rs73521373	1.00[EUR][1000 genomes]
rs73521381	1.00[EUR][1000 genomes]
rs73523318	1.00[EUR][1000 genomes]
rs73523320	1.00[EUR][1000 genomes]
rs73523339	1.00[EUR][1000 genomes]
rs73523343	1.00[EUR][1000 genomes]
rs73523351	1.00[EUR][1000 genomes]
rs73523361	1.00[EUR][1000 genomes]
rs73523365	1.00[EUR][1000 genomes]
rs73531317	0.87[AMR][1000 genomes]
rs73531372	0.87[AMR][1000 genomes]
rs73531400	0.87[AMR][1000 genomes]
rs73533313	0.87[AMR][1000 genomes]
rs73533322	0.87[AMR][1000 genomes]
rs73533335	0.87[AMR][1000 genomes]
rs794256	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs794265	1.00[EUR][1000 genomes]
rs807807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9401100	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9885892	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119356400-119368800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:119356800-119366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:119359400-119364400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:119360200-119364600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:119361200-119364400	Weak transcription	K562	blood
8	chr6:119361400-119364400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:119361800-119364400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:119362000-119364400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:119362600-119364400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:119362600-119364600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:119363400-119366600	Weak transcription	Fetal Intestine Small	intestine
14	chr6:119363600-119364600	Weak transcription	Placenta	Placenta
15	chr6:119363800-119366200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:119364200-119366400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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