Variant report

Variant	rs60554369
Chromosome Location	chr6:119260787-119260788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119256460..119259122-chr6:119259921..119263121,4	K562	blood:
2	chr6:119257082..119259694-chr6:119259960..119261722,2	K562	blood:
3	chr6:119255269..119257410-chr6:119258085..119262508,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000253194	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1288527	1.00[EUR][1000 genomes]
rs1334921	1.00[EUR][1000 genomes]
rs1334923	1.00[EUR][1000 genomes]
rs1413907	1.00[EUR][1000 genomes]
rs1688637	1.00[EUR][1000 genomes]
rs1762192	1.00[EUR][1000 genomes]
rs2000111	1.00[EUR][1000 genomes]
rs2184457	1.00[EUR][1000 genomes]
rs2638540	1.00[EUR][1000 genomes]
rs2797353	1.00[EUR][1000 genomes]
rs2797354	1.00[EUR][1000 genomes]
rs2797362	1.00[EUR][1000 genomes]
rs284917	1.00[EUR][1000 genomes]
rs586708	1.00[EUR][1000 genomes]
rs59123354	1.00[EUR][1000 genomes]
rs59547233	1.00[EUR][1000 genomes]
rs607092	1.00[EUR][1000 genomes]
rs608435	1.00[EUR][1000 genomes]
rs617874	1.00[EUR][1000 genomes]
rs637322	1.00[EUR][1000 genomes]
rs651781	1.00[EUR][1000 genomes]
rs659411	1.00[EUR][1000 genomes]
rs660068	1.00[EUR][1000 genomes]
rs673507	1.00[EUR][1000 genomes]
rs6903032	1.00[EUR][1000 genomes]
rs6907441	1.00[EUR][1000 genomes]
rs6914241	1.00[EUR][1000 genomes]
rs73519448	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73519453	1.00[EUR][1000 genomes]
rs73519455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521381	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523318	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523339	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73523343	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73523351	1.00[EUR][1000 genomes]
rs73523361	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73523365	1.00[EUR][1000 genomes]
rs7751545	1.00[EUR][1000 genomes]
rs794256	1.00[EUR][1000 genomes]
rs794265	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs807807	1.00[EUR][1000 genomes]
rs9372513	1.00[EUR][1000 genomes]
rs9401100	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9885892	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16596	chr6:119251007-119272087	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119256600-119260800	Weak transcription	Esophagus	oesophagus
2	chr6:119256600-119260800	Weak transcription	Left Ventricle	heart
3	chr6:119256600-119261800	Weak transcription	Gastric	stomach
4	chr6:119256600-119262000	Weak transcription	Pancreas	Pancrea
5	chr6:119256800-119260800	Weak transcription	Fetal Stomach	stomach
6	chr6:119256800-119260800	Weak transcription	Right Ventricle	heart
7	chr6:119256800-119261000	Weak transcription	Aorta	Aorta
8	chr6:119256800-119262000	Weak transcription	Thymus	Thymus
9	chr6:119257000-119260800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:119257000-119262400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:119257200-119261200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:119257400-119261000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:119257400-119262000	Weak transcription	Primary B cells from cord blood	blood
14	chr6:119257800-119260800	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:119257800-119261600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:119258000-119261600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:119258200-119261400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:119258400-119261600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:119259000-119261000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:119259600-119262400	Strong transcription	Primary T cells from cord blood	blood
21	chr6:119260400-119261800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:119260600-119261600	Enhancers	Adipose Nuclei	Adipose

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