Variant report

Variant	rs659411
Chromosome Location	chr6:119387156-119387157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119383826..119386462-chr6:119386776..119389889,4	K562	blood:
2	chr6:119381731..119385519-chr6:119386330..119388707,4	K562	blood:
3	chr6:119366419..119369327-chr6:119386975..119389213,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1288527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320445	0.87[AMR][1000 genomes]
rs1334921	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334923	1.00[EUR][1000 genomes]
rs1413907	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1762192	1.00[EUR][1000 genomes]
rs2184457	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797353	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797354	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586708	1.00[EUR][1000 genomes]
rs59123354	1.00[EUR][1000 genomes]
rs60554369	1.00[EUR][1000 genomes]
rs607092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs608435	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs617874	0.94[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs637322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs651781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660068	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs673507	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903032	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907441	1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924394	1.00[EUR][1000 genomes]
rs73519453	1.00[EUR][1000 genomes]
rs73519455	1.00[EUR][1000 genomes]
rs73521373	1.00[EUR][1000 genomes]
rs73521381	1.00[EUR][1000 genomes]
rs73523318	1.00[EUR][1000 genomes]
rs73523320	1.00[EUR][1000 genomes]
rs73523339	1.00[EUR][1000 genomes]
rs73523343	1.00[EUR][1000 genomes]
rs73523351	1.00[EUR][1000 genomes]
rs73523361	1.00[EUR][1000 genomes]
rs73523365	1.00[EUR][1000 genomes]
rs73531317	0.87[AMR][1000 genomes]
rs73531372	0.87[AMR][1000 genomes]
rs73531400	0.87[AMR][1000 genomes]
rs73533313	0.87[AMR][1000 genomes]
rs73533322	0.87[AMR][1000 genomes]
rs73533335	0.87[AMR][1000 genomes]
rs794256	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs794265	1.00[EUR][1000 genomes]
rs807807	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9401100	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9885892	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv528632	chr6:119380885-119397860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119378200-119388400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119382000-119387200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:119385000-119397200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:119385800-119387200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:119385800-119388800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:119386600-119388000	Enhancers	Fetal Lung	lung
7	chr6:119387000-119387400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:119387000-119388200	Enhancers	K562	blood

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