Variant report

Variant	rs73531372
Chromosome Location	chr6:119394882-119394883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1288527	0.87[AMR][1000 genomes]
rs1320445	1.00[AMR][1000 genomes]
rs2797362	0.87[AMR][1000 genomes]
rs59069536	0.87[AMR][1000 genomes]
rs607092	0.87[AMR][1000 genomes]
rs608435	0.87[AMR][1000 genomes]
rs617874	0.87[AMR][1000 genomes]
rs622521	0.85[AMR][1000 genomes]
rs637322	0.87[AMR][1000 genomes]
rs651781	0.87[AMR][1000 genomes]
rs659411	0.87[AMR][1000 genomes]
rs660068	0.87[AMR][1000 genomes]
rs673507	0.87[AMR][1000 genomes]
rs73531317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531400	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533313	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533322	1.00[AMR][1000 genomes]
rs73533335	1.00[AMR][1000 genomes]
rs807807	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv528632	chr6:119380885-119397860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119385000-119397200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:119393200-119397400	Weak transcription	HepG2	liver
3	chr6:119393600-119398200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:119393600-119398400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:119394200-119395000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:119394200-119395400	Enhancers	K562	blood
7	chr6:119394400-119396800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:119394400-119397400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:119394600-119395000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:119394600-119395400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:119394600-119397000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:119394600-119397200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:119394800-119395000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:119394800-119396200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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