Variant report

Variant	rs622521
Chromosome Location	chr6:119433860-119433861
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1320445	0.85[AMR][1000 genomes]
rs611679	0.83[AMR][1000 genomes]
rs73531317	0.85[AMR][1000 genomes]
rs73531372	0.85[AMR][1000 genomes]
rs73531400	0.85[AMR][1000 genomes]
rs73533313	0.85[AMR][1000 genomes]
rs73533322	0.85[AMR][1000 genomes]
rs73533335	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119431800-119434200	Weak transcription	Placenta	Placenta
2	chr6:119431800-119438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:119432000-119434000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:119432000-119434000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:119432000-119434000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:119432000-119434200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:119432400-119434000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119432400-119434000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:119432400-119434000	Weak transcription	K562	blood
10	chr6:119432400-119434200	Weak transcription	HepG2	liver
11	chr6:119432400-119440800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:119432800-119434000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:119433400-119435000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:119433800-119434000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:119433800-119434400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:119433800-119434400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:119433800-119434400	Enhancers	Fetal Lung	lung
18	chr6:119433800-119434600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr6:119433800-119434600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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