Variant report

Variant	rs6907441
Chromosome Location	chr6:119345408-119345409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:119345373-119345554	H1-hESC	embryonic stem cell:	n/a	n/a
2	NANOG	chr6:119345333-119345631	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:119254679..119257709-chr6:119345314..119348815,3	K562	blood:
2	chr6:119254455..119256179-chr6:119344238..119346814,2	K562	blood:
3	chr6:119344453..119347404-chr6:119349767..119351941,2	K562	blood:

Variant related genes	Relation type
FAM184A	TF binding region
ENSG00000111877	Chromatin interaction
ENSG00000253194	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1288527	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334921	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334923	1.00[EUR][1000 genomes]
rs1413907	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1762192	1.00[EUR][1000 genomes]
rs2000111	1.00[TSI][hapmap]
rs2184457	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797354	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797362	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586708	1.00[EUR][1000 genomes]
rs59123354	1.00[EUR][1000 genomes]
rs59547233	1.00[EUR][1000 genomes]
rs60554369	1.00[EUR][1000 genomes]
rs607092	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs608435	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs617874	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs637322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs651781	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs659411	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660068	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs673507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903032	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924394	1.00[EUR][1000 genomes]
rs73519448	1.00[EUR][1000 genomes]
rs73519453	1.00[EUR][1000 genomes]
rs73519455	1.00[EUR][1000 genomes]
rs73521373	1.00[EUR][1000 genomes]
rs73521381	1.00[EUR][1000 genomes]
rs73523318	1.00[EUR][1000 genomes]
rs73523320	1.00[EUR][1000 genomes]
rs73523339	1.00[EUR][1000 genomes]
rs73523343	1.00[EUR][1000 genomes]
rs73523351	1.00[EUR][1000 genomes]
rs73523361	1.00[EUR][1000 genomes]
rs73523365	1.00[EUR][1000 genomes]
rs73523382	0.97[AFR][1000 genomes]
rs794256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs794265	1.00[EUR][1000 genomes]
rs807807	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9401100	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9885892	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:119328600-119348800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:119330400-119347000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:119331400-119345800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:119331400-119349800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:119331400-119356000	Weak transcription	Ovary	ovary
8	chr6:119331600-119349200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:119331600-119355800	Weak transcription	K562	blood
10	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:119334800-119347000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
13	chr6:119340200-119347000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:119341400-119346200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:119341400-119356200	Weak transcription	Fetal Stomach	stomach
16	chr6:119343400-119356400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:119343600-119355800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:119343800-119349800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:119344000-119347000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:119344200-119345800	Enhancers	Fetal Lung	lung
21	chr6:119344600-119348400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:119344800-119345600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:119344800-119346000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:119344800-119346000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:119345000-119345600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr6:119345000-119346000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:119345200-119345800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:119345200-119346000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr6:119345200-119346200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:119345200-119349200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr6:119345200-119350400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:119345400-119345600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:119345400-119345600	Enhancers	Brain Cingulate Gyrus	brain
34	chr6:119345400-119345600	Enhancers	Lung	lung
35	chr6:119345400-119345600	Enhancers	Pancreas	Pancrea
36	chr6:119345400-119346200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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