Variant report

Variant	rs73523382
Chromosome Location	chr6:119340916-119340917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119340150..119341982-chr6:119399183..119401577,2	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1334921	0.92[AFR][1000 genomes]
rs1413907	0.92[AFR][1000 genomes]
rs2184457	0.92[AFR][1000 genomes]
rs2797353	0.92[AFR][1000 genomes]
rs2797354	0.92[AFR][1000 genomes]
rs6903032	0.92[AFR][1000 genomes]
rs6907441	0.97[AFR][1000 genomes]
rs794256	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:119293200-119345400	Weak transcription	Lung	lung
3	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:119318600-119344200	Weak transcription	Fetal Lung	lung
7	chr6:119319800-119342600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:119328600-119348800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:119329200-119343400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:119330200-119342400	Weak transcription	Liver	Liver
12	chr6:119330400-119347000	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:119330800-119342800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:119331000-119344200	Weak transcription	Gastric	stomach
15	chr6:119331000-119344400	Weak transcription	Fetal Brain Female	brain
16	chr6:119331400-119345200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:119331400-119345800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:119331400-119349800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:119331400-119356000	Weak transcription	Ovary	ovary
20	chr6:119331600-119341600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:119331600-119349200	Weak transcription	Adipose Nuclei	Adipose
22	chr6:119331600-119355800	Weak transcription	K562	blood
23	chr6:119332400-119344200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:119334800-119347000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:119336400-119345400	Weak transcription	Pancreas	Pancrea
27	chr6:119336800-119344000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:119337600-119341400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:119337800-119341600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:119337800-119345200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:119338000-119344000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:119338000-119344200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:119338400-119341600	Weak transcription	HepG2	liver
34	chr6:119339400-119341200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
36	chr6:119339600-119344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:119339600-119344200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:119340200-119347000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:119340400-119343800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:119340600-119344000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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