Variant report

Variant	rs73523318
Chromosome Location	chr6:119296543-119296544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119256205..119257932-chr6:119293855..119296677,2	K562	blood:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1288527	1.00[EUR][1000 genomes]
rs1334921	1.00[EUR][1000 genomes]
rs1334923	1.00[EUR][1000 genomes]
rs1413907	1.00[EUR][1000 genomes]
rs1762192	1.00[EUR][1000 genomes]
rs2000111	1.00[EUR][1000 genomes]
rs2184457	1.00[EUR][1000 genomes]
rs2638540	1.00[EUR][1000 genomes]
rs2797353	1.00[EUR][1000 genomes]
rs2797354	1.00[EUR][1000 genomes]
rs2797362	1.00[EUR][1000 genomes]
rs284917	1.00[EUR][1000 genomes]
rs586708	1.00[EUR][1000 genomes]
rs59123354	1.00[EUR][1000 genomes]
rs59547233	1.00[EUR][1000 genomes]
rs60554369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs607092	1.00[EUR][1000 genomes]
rs608435	1.00[EUR][1000 genomes]
rs617874	1.00[EUR][1000 genomes]
rs637322	1.00[EUR][1000 genomes]
rs651781	1.00[EUR][1000 genomes]
rs659411	1.00[EUR][1000 genomes]
rs660068	1.00[EUR][1000 genomes]
rs673507	1.00[EUR][1000 genomes]
rs6903032	1.00[EUR][1000 genomes]
rs6907441	1.00[EUR][1000 genomes]
rs73519448	1.00[EUR][1000 genomes]
rs73519453	1.00[EUR][1000 genomes]
rs73519455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523339	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73523343	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73523351	1.00[EUR][1000 genomes]
rs73523361	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73523365	1.00[EUR][1000 genomes]
rs7751545	1.00[EUR][1000 genomes]
rs794256	1.00[EUR][1000 genomes]
rs794265	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs807807	1.00[EUR][1000 genomes]
rs9372513	1.00[EUR][1000 genomes]
rs9401100	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9885892	1.00[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119279600-119298200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:119281600-119298000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:119281600-119298000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:119281600-119299400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:119281600-119303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:119283600-119302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:119285200-119304400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
11	chr6:119286000-119300000	Weak transcription	Brain Anterior Caudate	brain
12	chr6:119286000-119302800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:119286800-119298200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:119287200-119299400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:119287200-119305000	Weak transcription	HepG2	liver
16	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
17	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:119287600-119300200	Weak transcription	Placenta	Placenta
19	chr6:119288800-119299000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
21	chr6:119289200-119304600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:119292000-119298400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
24	chr6:119292800-119308600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:119293200-119345400	Weak transcription	Lung	lung
26	chr6:119293400-119306800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:119293600-119299400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:119293800-119299400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:119295600-119307200	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:119296200-119302200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:119296400-119296800	Enhancers	K562	blood
33	chr6:119296400-119299200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:119296400-119299200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:119296400-119302400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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