Variant report

Variant	rs4351408
Chromosome Location	chr8:60531186-60531187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16925218	1.00[EUR][1000 genomes]
rs56055752	1.00[EUR][1000 genomes]
rs58334138	1.00[EUR][1000 genomes]
rs7001191	1.00[EUR][1000 genomes]
rs73682834	1.00[EUR][1000 genomes]
rs9657028	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60526000-60532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:60528600-60531400	Enhancers	HUVEC	blood vessel
3	chr8:60528800-60531200	Enhancers	Fetal Stomach	stomach
4	chr8:60529400-60532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:60529400-60532400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:60529800-60531400	Enhancers	Fetal Lung	lung
7	chr8:60530200-60531200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:60530400-60531200	Enhancers	Colon Smooth Muscle	Colon
9	chr8:60530800-60532400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:60530800-60532600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:60530800-60533000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:60531000-60531200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:60531000-60532400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:60531000-60536400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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