Variant report

Variant	rs16925218
Chromosome Location	chr8:60654528-60654529
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10104862	0.85[ASN][1000 genomes]
rs16925082	0.85[ASN][1000 genomes]
rs16925122	0.85[ASN][1000 genomes]
rs16925188	0.85[ASN][1000 genomes]
rs4351408	1.00[EUR][1000 genomes]
rs56055752	1.00[EUR][1000 genomes]
rs58334138	1.00[EUR][1000 genomes]
rs60478918	1.00[EUR][1000 genomes]
rs62504701	0.85[ASN][1000 genomes]
rs62504702	0.85[ASN][1000 genomes]
rs7001191	1.00[EUR][1000 genomes]
rs73245952	0.85[ASN][1000 genomes]
rs73245958	0.85[ASN][1000 genomes]
rs73245966	0.85[ASN][1000 genomes]
rs73251501	1.00[EUR][1000 genomes]
rs73680628	0.85[ASN][1000 genomes]
rs73682834	1.00[EUR][1000 genomes]
rs9657028	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60651200-60655000	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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