Variant report
| Variant | rs10104862 |
|---|---|
| Chromosome Location | chr8:60583948-60583949 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:60581730..60584426-chr8:60598883..60600498,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs16925082 | 1.00[ASN][1000 genomes] |
| rs16925122 | 1.00[ASN][1000 genomes] |
| rs16925188 | 1.00[ASN][1000 genomes] |
| rs16925218 | 0.85[ASN][1000 genomes] |
| rs62504698 | 0.91[EUR][1000 genomes] |
| rs62504699 | 0.91[EUR][1000 genomes] |
| rs62504700 | 0.91[EUR][1000 genomes] |
| rs62504701 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62504702 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62504726 | 0.91[EUR][1000 genomes] |
| rs62504727 | 0.91[EUR][1000 genomes] |
| rs62504728 | 0.83[EUR][1000 genomes] |
| rs6984776 | 1.00[JPT][hapmap] |
| rs73245952 | 1.00[ASN][1000 genomes] |
| rs73245958 | 1.00[ASN][1000 genomes] |
| rs73245966 | 1.00[ASN][1000 genomes] |
| rs73245972 | 0.86[ASN][1000 genomes] |
| rs73680628 | 1.00[ASN][1000 genomes] |
| rs9643512 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030564 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv539630 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60583400-60591400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
