Variant report

Variant	rs62504728
Chromosome Location	chr8:60589190-60589191
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10104862	0.83[EUR][1000 genomes]
rs16925214	0.91[EUR][1000 genomes]
rs28517350	0.91[EUR][1000 genomes]
rs2875935	0.82[EUR][1000 genomes]
rs62504698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62504699	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62504700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62504701	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62504702	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62504726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62504727	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62504742	0.91[EUR][1000 genomes]
rs62506402	0.87[EUR][1000 genomes]
rs62506403	0.87[EUR][1000 genomes]
rs62506404	0.83[EUR][1000 genomes]
rs62512484	0.82[EUR][1000 genomes]
rs6984337	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60583400-60591400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60588000-60589400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:60588200-60590400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:60588400-60589800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:60588400-60590400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:60588400-60590800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:60588600-60590800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:60589000-60590000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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