Variant report
| Variant | rs16925214 |
|---|---|
| Chromosome Location | chr8:60652836-60652837 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs17270329 | 1.00[AMR][1000 genomes] |
| rs17270443 | 1.00[AMR][1000 genomes] |
| rs17322678 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17342137 | 1.00[AMR][1000 genomes] |
| rs17342347 | 1.00[AMR][1000 genomes] |
| rs28517350 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2875935 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62504698 | 0.82[EUR][1000 genomes] |
| rs62504699 | 0.82[EUR][1000 genomes] |
| rs62504700 | 0.82[EUR][1000 genomes] |
| rs62504701 | 0.82[EUR][1000 genomes] |
| rs62504702 | 0.82[EUR][1000 genomes] |
| rs62504726 | 0.82[EUR][1000 genomes] |
| rs62504727 | 0.82[EUR][1000 genomes] |
| rs62504728 | 0.91[EUR][1000 genomes] |
| rs62504742 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62506402 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62506403 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62506404 | 0.91[EUR][1000 genomes] |
| rs62509972 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62509973 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62509975 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62509976 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62509977 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62509989 | 1.00[AMR][1000 genomes] |
| rs62510029 | 1.00[AMR][1000 genomes] |
| rs62510040 | 1.00[AMR][1000 genomes] |
| rs62512484 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62512516 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62512522 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62512523 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6984337 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030564 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv539630 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv890942 | chr8:60639357-60686330 | Enhancers Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60651200-60655000 | Weak transcription | Primary B cells from cord blood | blood |
