Variant report
| Variant | rs6984337 |
|---|---|
| Chromosome Location | chr8:60670709-60670710 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr8:60670528-60670739 | MCF10A-Er-Src | breast: | n/a | chr8:60670528-60670551 chr8:60670528-60670536 |
| 2 | FOXA1 | chr8:60670555-60670798 | T-47D | breast: | n/a | n/a |
| 3 | GATA3 | chr8:60670463-60670805 | T-47D | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:100026306..100026939-chr8:60670573..60671075,2 | NB4 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253413 | TF binding region |
| ENSG00000078487 | Chromatin interaction |
| ENSG00000146834 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs16925214 | 0.91[EUR][1000 genomes] |
| rs17322678 | 0.83[EUR][1000 genomes] |
| rs28517350 | 0.91[EUR][1000 genomes] |
| rs2875935 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62504728 | 0.83[EUR][1000 genomes] |
| rs62504742 | 0.91[EUR][1000 genomes] |
| rs62506402 | 0.96[EUR][1000 genomes] |
| rs62506403 | 0.96[EUR][1000 genomes] |
| rs62506404 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62509972 | 0.83[EUR][1000 genomes] |
| rs62509973 | 0.83[EUR][1000 genomes] |
| rs62509975 | 0.83[EUR][1000 genomes] |
| rs62509976 | 0.83[EUR][1000 genomes] |
| rs62509977 | 0.83[EUR][1000 genomes] |
| rs62512484 | 0.91[EUR][1000 genomes] |
| rs62512516 | 0.83[EUR][1000 genomes] |
| rs62512522 | 0.83[EUR][1000 genomes] |
| rs62512523 | 0.83[EUR][1000 genomes] |
| rs7001585 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030564 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv539630 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv890942 | chr8:60639357-60686330 | Enhancers Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60668400-60672000 | Weak transcription | Pancreas | Pancrea |
| 2 | chr8:60670600-60670800 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
