Variant report

Variant	rs62512484
Chromosome Location	chr8:60710863-60710864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60699554..60701711-chr8:60710217..60711758,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10091969	0.83[AMR][1000 genomes]
rs16925214	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17270329	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17270443	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17322678	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17342137	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17342347	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17343412	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17344773	1.00[AMR][1000 genomes]
rs17344931	1.00[AMR][1000 genomes]
rs28517350	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2875935	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62504728	0.82[EUR][1000 genomes]
rs62504742	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62506402	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62506403	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62506404	0.91[EUR][1000 genomes]
rs62509972	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509973	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509975	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509976	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509977	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509989	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62510029	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62510040	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62511080	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62511145	0.83[AMR][1000 genomes]
rs62511147	1.00[AMR][1000 genomes]
rs62511150	1.00[AMR][1000 genomes]
rs62512516	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512522	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512523	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6984337	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60709800-60711000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:60710000-60711000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:60710800-60711600	Enhancers	GM12878-XiMat	blood
4	chr8:60710800-60711800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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