Variant report

Variant	rs17344931
Chromosome Location	chr8:60885281-60885282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:12654971..12655664-chr8:60884734..60885526,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10091969	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092264	0.82[EUR][1000 genomes]
rs10104844	0.90[EUR][1000 genomes]
rs10105249	0.82[EUR][1000 genomes]
rs10113409	0.82[EUR][1000 genomes]
rs10504304	0.90[EUR][1000 genomes]
rs11986881	0.90[EUR][1000 genomes]
rs11990259	0.82[EUR][1000 genomes]
rs11997353	0.82[EUR][1000 genomes]
rs13439744	0.82[EUR][1000 genomes]
rs16925552	0.90[EUR][1000 genomes]
rs16925559	0.82[EUR][1000 genomes]
rs17270329	1.00[AMR][1000 genomes]
rs17270443	1.00[AMR][1000 genomes]
rs17279957	0.90[EUR][1000 genomes]
rs17280265	0.82[EUR][1000 genomes]
rs17280286	0.90[EUR][1000 genomes]
rs17280386	0.90[EUR][1000 genomes]
rs17280559	0.82[EUR][1000 genomes]
rs17280832	0.90[EUR][1000 genomes]
rs17281256	0.82[EUR][1000 genomes]
rs17281312	0.90[EUR][1000 genomes]
rs17281361	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17322678	1.00[AMR][1000 genomes]
rs17342137	1.00[AMR][1000 genomes]
rs17342347	1.00[AMR][1000 genomes]
rs17343412	1.00[AMR][1000 genomes]
rs17344773	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17346051	0.82[EUR][1000 genomes]
rs17346175	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17346319	0.90[EUR][1000 genomes]
rs17346443	0.82[EUR][1000 genomes]
rs17346637	0.90[EUR][1000 genomes]
rs28429790	0.82[EUR][1000 genomes]
rs28483493	0.82[EUR][1000 genomes]
rs28654982	0.82[EUR][1000 genomes]
rs28663360	0.82[EUR][1000 genomes]
rs2875935	0.83[AMR][1000 genomes]
rs62509861	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62509862	0.82[EUR][1000 genomes]
rs62509972	1.00[AMR][1000 genomes]
rs62509973	1.00[AMR][1000 genomes]
rs62509975	1.00[AMR][1000 genomes]
rs62509976	1.00[AMR][1000 genomes]
rs62509977	1.00[AMR][1000 genomes]
rs62509989	1.00[AMR][1000 genomes]
rs62510029	1.00[AMR][1000 genomes]
rs62510040	1.00[AMR][1000 genomes]
rs62511080	0.83[AMR][1000 genomes]
rs62511145	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62511147	1.00[AMR][1000 genomes]
rs62511150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62512088	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62512128	0.82[EUR][1000 genomes]
rs62512129	0.82[EUR][1000 genomes]
rs62512130	0.82[EUR][1000 genomes]
rs62512131	0.82[EUR][1000 genomes]
rs62512132	0.82[EUR][1000 genomes]
rs62512484	1.00[AMR][1000 genomes]
rs62512516	1.00[AMR][1000 genomes]
rs62512522	1.00[AMR][1000 genomes]
rs62512523	1.00[AMR][1000 genomes]
rs73682244	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60883400-60885600	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:60883600-60885400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:60883600-60885600	Enhancers	Primary B cells from cord blood	blood
4	chr8:60884400-60885600	Enhancers	Colon Smooth Muscle	Colon
5	chr8:60884600-60885600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:60884800-60885600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:60885000-60885400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:60885000-60885600	Active TSS	Primary T cells fromperipheralblood	blood
9	chr8:60885000-60885600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr8:60885000-60885600	Enhancers	Dnd41	blood
11	chr8:60885000-60885800	Active TSS	Stomach Smooth Muscle	stomach
12	chr8:60885200-60885400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr8:60885200-60885400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:60885200-60885400	Active TSS	GM12878-XiMat	blood
15	chr8:60885200-60885600	Active TSS	Rectal Mucosa Donor 29	rectum

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