Variant report

Variant	rs17281361
Chromosome Location	chr8:60953829-60953830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10091969	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10092264	0.91[EUR][1000 genomes]
rs10104844	1.00[EUR][1000 genomes]
rs10105249	0.91[EUR][1000 genomes]
rs10113409	0.91[EUR][1000 genomes]
rs10504304	1.00[EUR][1000 genomes]
rs11986881	1.00[EUR][1000 genomes]
rs11990259	0.91[EUR][1000 genomes]
rs11997353	0.91[EUR][1000 genomes]
rs13439744	0.91[EUR][1000 genomes]
rs16925552	1.00[EUR][1000 genomes]
rs16925559	0.91[EUR][1000 genomes]
rs17270329	1.00[AMR][1000 genomes]
rs17270443	1.00[AMR][1000 genomes]
rs17279957	1.00[EUR][1000 genomes]
rs17280265	0.91[EUR][1000 genomes]
rs17280286	1.00[EUR][1000 genomes]
rs17280386	1.00[EUR][1000 genomes]
rs17280559	0.91[EUR][1000 genomes]
rs17280832	1.00[EUR][1000 genomes]
rs17281256	0.91[EUR][1000 genomes]
rs17281312	1.00[EUR][1000 genomes]
rs17342137	1.00[AMR][1000 genomes]
rs17342347	1.00[AMR][1000 genomes]
rs17343412	1.00[AMR][1000 genomes]
rs17344773	1.00[AMR][1000 genomes]
rs17344931	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17346051	0.91[EUR][1000 genomes]
rs17346175	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17346319	1.00[EUR][1000 genomes]
rs17346443	0.91[EUR][1000 genomes]
rs17346637	1.00[EUR][1000 genomes]
rs28429790	0.91[EUR][1000 genomes]
rs28483493	0.91[EUR][1000 genomes]
rs28654982	0.91[EUR][1000 genomes]
rs28663360	0.91[EUR][1000 genomes]
rs62509861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62509862	0.91[EUR][1000 genomes]
rs62509972	1.00[AMR][1000 genomes]
rs62509973	1.00[AMR][1000 genomes]
rs62509975	1.00[AMR][1000 genomes]
rs62509976	1.00[AMR][1000 genomes]
rs62509977	1.00[AMR][1000 genomes]
rs62509989	1.00[AMR][1000 genomes]
rs62510029	1.00[AMR][1000 genomes]
rs62510040	1.00[AMR][1000 genomes]
rs62511080	0.83[AMR][1000 genomes]
rs62511145	0.83[AMR][1000 genomes]
rs62511147	1.00[AMR][1000 genomes]
rs62511150	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62512088	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62512128	0.91[EUR][1000 genomes]
rs62512129	0.91[EUR][1000 genomes]
rs62512130	0.91[EUR][1000 genomes]
rs62512131	0.91[EUR][1000 genomes]
rs62512132	0.91[EUR][1000 genomes]
rs73682244	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60940000-60968400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:60952200-60954000	Enhancers	HMEC	breast
3	chr8:60952400-60955400	Weak transcription	Fetal Stomach	stomach
4	chr8:60953000-60954600	Weak transcription	HUVEC	blood vessel
5	chr8:60953400-60954600	Weak transcription	Fetal Kidney	kidney
6	chr8:60953400-60954600	Enhancers	Placenta	Placenta
7	chr8:60953400-60954800	Enhancers	GM12878-XiMat	blood

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