Variant report

Variant	rs62509989
Chromosome Location	chr8:60789563-60789564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10091969	0.83[AMR][1000 genomes]
rs16925214	1.00[AMR][1000 genomes]
rs16925436	0.96[EUR][1000 genomes]
rs16925438	0.88[EUR][1000 genomes]
rs16925439	0.88[EUR][1000 genomes]
rs16925446	0.88[EUR][1000 genomes]
rs16925448	0.88[EUR][1000 genomes]
rs17270329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17270443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17281361	1.00[AMR][1000 genomes]
rs17322678	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17342137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17342347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17343412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17344773	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17344931	1.00[AMR][1000 genomes]
rs17346175	0.83[AMR][1000 genomes]
rs28517350	1.00[AMR][1000 genomes]
rs2875935	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60430945	0.81[EUR][1000 genomes]
rs62504742	1.00[AMR][1000 genomes]
rs62506402	1.00[AMR][1000 genomes]
rs62506403	1.00[AMR][1000 genomes]
rs62509861	1.00[AMR][1000 genomes]
rs62509972	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509973	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509975	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509976	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62509977	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62510029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62510039	0.88[EUR][1000 genomes]
rs62510040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511073	0.88[EUR][1000 genomes]
rs62511074	0.88[EUR][1000 genomes]
rs62511075	0.88[EUR][1000 genomes]
rs62511080	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511145	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62511147	1.00[AMR][1000 genomes]
rs62511150	1.00[AMR][1000 genomes]
rs62512088	0.83[AMR][1000 genomes]
rs62512484	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62512516	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512522	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512523	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7002513	0.88[EUR][1000 genomes]
rs7002780	0.88[EUR][1000 genomes]
rs7003409	0.88[EUR][1000 genomes]
rs7003592	0.88[EUR][1000 genomes]
rs7007065	0.88[EUR][1000 genomes]
rs7007191	0.88[EUR][1000 genomes]
rs7823305	0.96[EUR][1000 genomes]
rs7827640	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60789200-60789600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:60789200-60789600	Enhancers	HMEC	breast

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