Variant report

Variant	rs62512088
Chromosome Location	chr8:60912499-60912500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10091969	0.90[EUR][1000 genomes]
rs10092264	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10104844	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105249	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10113409	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10504304	1.00[EUR][1000 genomes]
rs11986881	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11990259	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11997353	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13439744	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925552	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925559	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17270329	0.83[AMR][1000 genomes]
rs17270443	0.83[AMR][1000 genomes]
rs17279957	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17280265	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17280286	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17280386	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17280559	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17280832	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17281256	0.91[EUR][1000 genomes]
rs17281312	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17281361	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17322678	0.83[AMR][1000 genomes]
rs17342137	0.83[AMR][1000 genomes]
rs17342347	0.83[AMR][1000 genomes]
rs17343412	0.83[AMR][1000 genomes]
rs17344773	0.83[AMR][1000 genomes]
rs17344931	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17346051	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17346175	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17346319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17346443	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17346637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28429790	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28483493	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28654982	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28663360	0.91[EUR][1000 genomes]
rs62509861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62509862	0.91[EUR][1000 genomes]
rs62509972	0.83[AMR][1000 genomes]
rs62509973	0.83[AMR][1000 genomes]
rs62509975	0.83[AMR][1000 genomes]
rs62509976	0.83[AMR][1000 genomes]
rs62509977	0.83[AMR][1000 genomes]
rs62509989	0.83[AMR][1000 genomes]
rs62510029	0.83[AMR][1000 genomes]
rs62510040	0.83[AMR][1000 genomes]
rs62511147	0.83[AMR][1000 genomes]
rs62511150	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62512128	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512129	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512130	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512131	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512132	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62512516	0.83[AMR][1000 genomes]
rs62512522	0.83[AMR][1000 genomes]
rs62512523	0.83[AMR][1000 genomes]
rs73682244	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60911400-60912600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:60911800-60912800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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