Variant report
| Variant | rs62511145 |
|---|---|
| Chromosome Location | chr8:60871861-60871862 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10091969 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs16925436 | 0.82[EUR][1000 genomes] |
| rs17270329 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17270443 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17281361 | 0.83[AMR][1000 genomes] |
| rs17322678 | 0.83[AMR][1000 genomes] |
| rs17342137 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17342347 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17343412 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17344773 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17344931 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62509861 | 0.83[AMR][1000 genomes] |
| rs62509972 | 0.83[AMR][1000 genomes] |
| rs62509973 | 0.83[AMR][1000 genomes] |
| rs62509975 | 0.83[AMR][1000 genomes] |
| rs62509976 | 0.83[AMR][1000 genomes] |
| rs62509977 | 0.83[AMR][1000 genomes] |
| rs62509989 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs62510029 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs62510040 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs62511080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs62511147 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62511150 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62512484 | 0.83[AMR][1000 genomes] |
| rs62512516 | 0.83[AMR][1000 genomes] |
| rs62512522 | 0.83[AMR][1000 genomes] |
| rs62512523 | 0.83[AMR][1000 genomes] |
| rs7823305 | 0.82[EUR][1000 genomes] |
| rs7827640 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831331 | chr8:60770382-60959633 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60871600-60884800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
