Variant report

Variant	rs16925082
Chromosome Location	chr8:60554196-60554197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10104862	1.00[ASN][1000 genomes]
rs11775893	0.98[EUR][1000 genomes]
rs11778476	0.83[EUR][1000 genomes]
rs11784285	1.00[EUR][1000 genomes]
rs16925122	1.00[ASN][1000 genomes]
rs16925188	1.00[ASN][1000 genomes]
rs16925218	0.85[ASN][1000 genomes]
rs62504701	1.00[ASN][1000 genomes]
rs62504702	1.00[ASN][1000 genomes]
rs6984776	1.00[JPT][hapmap]
rs73245952	1.00[ASN][1000 genomes]
rs73245958	1.00[ASN][1000 genomes]
rs73245966	1.00[ASN][1000 genomes]
rs73245972	0.86[ASN][1000 genomes]
rs73680628	1.00[ASN][1000 genomes]
rs9643512	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60553400-60557200	Enhancers	Fetal Brain Male	brain
2	chr8:60553800-60555000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr8:60554000-60554200	Enhancers	Fetal Brain Female	brain
4	chr8:60554000-60554200	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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