Variant report

Variant	rs4353970
Chromosome Location	chr4:118752091-118752092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10000285	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10004249	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10007382	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10011404	0.96[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10019304	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10029445	0.81[EUR][1000 genomes]
rs1023890	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1023891	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10516639	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11098404	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11098407	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562851	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11562884	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12640737	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12646271	0.83[GIH][hapmap];0.80[MEX][hapmap]
rs12648654	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12650944	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1350616	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1350617	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1380370	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1380373	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1459531	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1459538	0.96[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs1459539	0.96[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs1459540	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1580230	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1599124	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17861256	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17862093	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17863939	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17867553	0.96[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs17867558	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1824392	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2012707	0.82[EUR][1000 genomes]
rs2012723	0.82[EUR][1000 genomes]
rs2125706	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2125707	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2125709	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2169059	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2169060	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2199184	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2389396	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3943389	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4240308	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4240309	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4240310	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4240311	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4270637	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4295331	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4331838	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4348166	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4395585	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4429786	0.89[YRI][hapmap]
rs4446400	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4451002	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4516794	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4568305	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4585377	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4594793	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4597906	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4602565	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4834639	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs6534055	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6534056	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6534057	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6818638	0.84[EUR][1000 genomes]
rs6824201	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6852960	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7436355	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7660571	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7660902	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7661175	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7666568	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7676619	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7685408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7687404	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7688820	0.82[EUR][1000 genomes]
rs936437	0.82[EUR][1000 genomes]
rs9884122	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9884177	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4353970	NDST3	cis	cerebellum	SCAN
rs4353970	PRSS12	cis	cerebellum	SCAN
rs4353970	NDST3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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