Variant report

Variant	rs12646271
Chromosome Location	chr4:118752635-118752636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10006167	0.82[EUR][1000 genomes]
rs1023892	0.86[AMR][1000 genomes]
rs12640486	0.82[EUR][1000 genomes]
rs12640843	0.85[AMR][1000 genomes]
rs12647615	0.84[AMR][1000 genomes]
rs1903180	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28791500	0.80[EUR][1000 genomes]
rs4353970	0.83[GIH][hapmap];0.80[MEX][hapmap]
rs4377657	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4392571	0.82[EUR][1000 genomes]
rs4429786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4461585	0.86[AMR][1000 genomes]
rs4569817	0.86[AMR][1000 genomes]
rs4574479	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4833553	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6819399	0.81[EUR][1000 genomes]
rs7686336	0.81[AMR][1000 genomes]
rs9307443	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9307444	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12646271	NDST3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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