Variant report

Variant	rs6819399
Chromosome Location	chr4:118736834-118736835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1023892	0.82[EUR][1000 genomes]
rs12640843	0.81[EUR][1000 genomes]
rs12643159	0.93[ASN][1000 genomes]
rs12646271	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs17636061	0.91[CHB][hapmap]
rs17863003	0.81[EUR][1000 genomes]
rs1903180	0.84[EUR][1000 genomes]
rs4429786	0.89[CEU][hapmap]
rs4461585	0.82[EUR][1000 genomes]
rs4569817	0.82[EUR][1000 genomes]
rs7686336	0.83[EUR][1000 genomes]
rs9307443	0.80[EUR][1000 genomes]
rs9307444	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118734800-118737600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:118734800-118737600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:118735000-118737000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:118735600-118737000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:118735600-118738000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:118735800-118737000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:118735800-118737600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:118736000-118739600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:118736200-118739800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:118736800-118737000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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