Variant report

Variant	rs4356893
Chromosome Location	chr4:47464246-47464247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47447254..47449925-chr4:47463916..47465485,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11737034	1.00[JPT][hapmap]
rs17571554	1.00[JPT][hapmap]
rs6812354	1.00[JPT][hapmap]
rs6848790	1.00[JPT][hapmap]
rs728292	1.00[JPT][hapmap]
rs7688710	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47436800-47465000	Weak transcription	Gastric	stomach
2	chr4:47445400-47465000	Weak transcription	Lung	lung
3	chr4:47445800-47465000	Weak transcription	Aorta	Aorta
4	chr4:47446000-47465000	Weak transcription	Esophagus	oesophagus
5	chr4:47449800-47465000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:47450600-47464400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:47450600-47464600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:47450600-47464800	Weak transcription	Colonic Mucosa	Colon
9	chr4:47450600-47464800	Weak transcription	A549	lung
10	chr4:47451000-47464400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:47451800-47464600	Weak transcription	Hela-S3	cervix
12	chr4:47452000-47464600	Weak transcription	K562	blood
13	chr4:47452400-47464800	Weak transcription	Right Ventricle	heart
14	chr4:47452400-47465000	Weak transcription	Psoas Muscle	Psoas
15	chr4:47452600-47464400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:47452600-47465200	Weak transcription	Spleen	Spleen
17	chr4:47453800-47464800	Weak transcription	HSMMtube	muscle
18	chr4:47454000-47465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:47454200-47464600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:47454200-47464800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:47454200-47465000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:47454600-47464800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:47454600-47465000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:47455200-47464400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:47455600-47464600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:47455600-47465000	Weak transcription	Ovary	ovary
27	chr4:47456400-47464600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr4:47456600-47464400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:47456600-47464600	Weak transcription	Placenta	Placenta
30	chr4:47456800-47464600	Weak transcription	Fetal Kidney	kidney
31	chr4:47456800-47464800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:47457200-47464400	Weak transcription	Primary T cells from cord blood	blood
33	chr4:47457600-47464600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:47458000-47464600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:47458200-47464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:47458200-47464400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr4:47458200-47464600	Weak transcription	Fetal Intestine Small	intestine
38	chr4:47458200-47464600	Weak transcription	Fetal Stomach	stomach
39	chr4:47458200-47464800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:47458200-47464800	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:47458200-47465000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:47459200-47464800	Weak transcription	Fetal Intestine Large	intestine
43	chr4:47461200-47464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:47461800-47464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:47461800-47464600	Weak transcription	NH-A	brain
46	chr4:47462000-47464400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:47462000-47464400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr4:47462000-47464600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:47462000-47464600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:47462000-47464600	Weak transcription	Rectal Mucosa Donor 29	rectum

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