Variant report
| Variant | rs6812354 |
|---|---|
| Chromosome Location | chr4:47360174-47360175 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11737034 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17571554 | 1.00[JPT][hapmap] |
| rs4356893 | 1.00[JPT][hapmap] |
| rs6447550 | 0.87[CEU][hapmap];0.88[YRI][hapmap] |
| rs6848790 | 0.95[CEU][hapmap];1.00[JPT][hapmap] |
| rs6854906 | 1.00[CEU][hapmap] |
| rs728292 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs728293 | 1.00[CEU][hapmap] |
| rs7688710 | 1.00[JPT][hapmap] |
| rs956412 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998919 | chr4:47207023-47476876 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
