Variant report

Variant	rs6854906
Chromosome Location	chr4:47359645-47359646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10517184	0.82[MEX][hapmap];0.81[TSI][hapmap]
rs10938482	0.82[MEX][hapmap]
rs11737034	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs4695220	0.82[MEX][hapmap]
rs6447550	0.86[CEU][hapmap];0.82[YRI][hapmap]
rs6812354	1.00[CEU][hapmap]
rs6830892	0.94[ASW][hapmap];0.98[LWK][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.85[YRI][hapmap]
rs6832172	1.00[CHD][hapmap];0.86[MEX][hapmap]
rs6848790	0.96[CEU][hapmap];0.89[YRI][hapmap]
rs728292	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs728293	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs7669958	1.00[CHD][hapmap];0.86[MEX][hapmap]
rs7677890	0.82[MEX][hapmap]
rs956412	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6854906	COMMD8	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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