Variant report

Variant	rs4361241
Chromosome Location	chr3:28607548-28607549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11705962	0.82[AMR][1000 genomes]
rs11707705	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11712484	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11712489	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11720107	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs11918050	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11921692	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs11921943	0.86[CHB][hapmap]
rs13075840	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13082167	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs13087143	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13087774	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13088574	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13090439	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13095628	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1457910	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1585211	0.86[CHB][hapmap]
rs1598846	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17021402	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17696459	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17696783	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs2168799	0.86[CHB][hapmap]
rs4133027	0.84[ASN][1000 genomes]
rs4234337	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4234338	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4234339	0.91[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4234340	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4234341	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4256085	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4295137	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4322963	0.81[AMR][1000 genomes]
rs4368456	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4450765	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4452283	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4478040	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4618184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680753	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4680760	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680761	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680762	0.90[EUR][1000 genomes]
rs4680913	0.86[CHB][hapmap]
rs6549860	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6771057	0.86[CHB][hapmap]
rs6771460	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6789363	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6800426	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803692	0.86[CHB][hapmap]
rs7434193	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7619927	0.84[ASN][1000 genomes]
rs7627471	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7627575	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7642049	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7643191	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7651883	0.86[CHB][hapmap]
rs969443	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9817953	0.86[AMR][1000 genomes]
rs9834829	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv876650	chr3:28427029-28613602	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4361241	WBP1	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28607200-28616400	Weak transcription	Aorta	Aorta
2	chr3:28607400-28608600	Enhancers	Fetal Heart	heart
3	chr3:28607400-28609200	Weak transcription	Colon Smooth Muscle	Colon

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