Variant report

Variant	rs9834829
Chromosome Location	chr3:28610406-28610407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28608320..28610630-chr3:28611248..28614239,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11705962	0.82[AMR][1000 genomes]
rs4133027	0.84[ASN][1000 genomes]
rs4234337	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4234338	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4234339	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4234340	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4234341	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4256085	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4295137	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4322963	0.81[AMR][1000 genomes]
rs4361241	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4368456	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4450765	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4478040	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4618184	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680753	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4680760	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680761	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680762	0.90[EUR][1000 genomes]
rs6549860	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6789363	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6800426	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619927	0.84[ASN][1000 genomes]
rs7627471	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7627575	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7642049	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9815067	0.81[EUR][1000 genomes]
rs9817953	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv876650	chr3:28427029-28613602	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28607200-28616400	Weak transcription	Aorta	Aorta
2	chr3:28610200-28611000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:28610400-28612800	Enhancers	Cortex derived primary cultured neurospheres	brain

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