Variant report

Variant	rs7627575
Chromosome Location	chr3:28590909-28590910
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AZI2-5	chr3:28590350-28591764	ucscGeneNc_uc003cej_1

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1037723	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11705962	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11707705	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11710963	0.88[ASN][1000 genomes]
rs11712484	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11712489	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11720107	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11918050	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11921692	0.89[CEU][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11924173	0.90[ASN][1000 genomes]
rs11926399	0.92[ASN][1000 genomes]
rs13066118	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13074633	0.92[ASN][1000 genomes]
rs13075840	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13080155	0.92[ASN][1000 genomes]
rs13081520	0.87[ASN][1000 genomes]
rs13081787	0.90[ASN][1000 genomes]
rs13082167	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs13087143	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13087774	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13088574	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13090439	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13095628	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1457909	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1457910	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1598846	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs17021402	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17639978	0.83[CEU][hapmap]
rs17696025	0.87[ASN][1000 genomes]
rs17696459	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17696561	0.92[ASN][1000 genomes]
rs17696783	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34311197	0.87[ASN][1000 genomes]
rs34796684	0.86[ASN][1000 genomes]
rs35088087	0.90[ASN][1000 genomes]
rs35137555	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35177150	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35702956	0.86[ASN][1000 genomes]
rs35825908	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36051688	0.90[ASN][1000 genomes]
rs36105900	0.89[CEU][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3762797	0.87[ASN][1000 genomes]
rs4234337	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234338	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs4234339	0.88[JPT][hapmap]
rs4234341	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs4256085	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295137	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4322963	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4361241	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4368456	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs4428136	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4450765	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452283	0.84[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4618184	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680753	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680760	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4680761	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58918848	0.90[ASN][1000 genomes]
rs59975750	0.88[ASN][1000 genomes]
rs60043893	0.88[ASN][1000 genomes]
rs62250271	0.92[ASN][1000 genomes]
rs62250272	0.92[ASN][1000 genomes]
rs62250273	0.91[ASN][1000 genomes]
rs62250296	0.92[ASN][1000 genomes]
rs62251131	0.86[ASN][1000 genomes]
rs62251134	0.86[ASN][1000 genomes]
rs62251138	0.87[ASN][1000 genomes]
rs62251144	0.87[ASN][1000 genomes]
rs6551255	0.90[ASN][1000 genomes]
rs66733194	0.87[ASN][1000 genomes]
rs66767946	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6771460	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6800426	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68085718	0.90[ASN][1000 genomes]
rs7434193	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7627471	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638450	0.92[ASN][1000 genomes]
rs7643191	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9683360	0.84[ASN][1000 genomes]
rs969443	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817953	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9834829	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv876650	chr3:28427029-28613602	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1004457	chr3:28541307-28595311	Strong transcription Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28589600-28598200	Weak transcription	Pancreas	Pancrea

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