Variant report

Variant	rs4378200
Chromosome Location	chr1:159941535-159941536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159905137..159907886-chr1:159939775..159941971,2	MCF-7	breast:
2	chr1:159914982..159917172-chr1:159939218..159941939,2	K562	blood:
3	chr1:159915582..159917480-chr1:159941204..159942730,2	MCF-7	breast:
4	chr1:159940364..159943958-chr1:159945441..159948326,4	K562	blood:
5	chr1:159941373..159945403-chr1:159947099..159949838,3	MCF-7	breast:
6	chr1:159940364..159943958-chr1:159945602..159948326,3	K562	blood:

Variant related genes	Relation type
ENSG00000085552	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4656248	1.00[JPT][hapmap]
rs4656250	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs4656859	1.00[JPT][hapmap]
rs4656860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4656861	0.90[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs4656862	0.90[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes]
rs60647227	0.92[ASN][1000 genomes]
rs6427500	0.86[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67918486	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7541727	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159928000-159941800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:159932000-159949800	Weak transcription	Esophagus	oesophagus
3	chr1:159933200-159947200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:159933400-159950600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:159937400-159947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:159937600-159944000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:159938000-159943400	Enhancers	Stomach Mucosa	stomach
8	chr1:159938200-159942000	Enhancers	Fetal Intestine Small	intestine
9	chr1:159938200-159943400	Enhancers	Fetal Intestine Large	intestine
10	chr1:159938800-159942200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr1:159939000-159945200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:159939400-159942200	Enhancers	Liver	Liver
13	chr1:159939600-159942000	Enhancers	Pancreas	Pancrea
14	chr1:159940200-159947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:159940600-159941600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:159940600-159941800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:159940600-159942600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr1:159940800-159941600	Enhancers	Spleen	Spleen
19	chr1:159941000-159942000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:159941000-159942200	Enhancers	Colonic Mucosa	Colon
21	chr1:159941000-159944600	Strong transcription	NHEK	skin
22	chr1:159941200-159941600	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr1:159941200-159941600	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr1:159941200-159941600	Enhancers	Right Atrium	heart
25	chr1:159941200-159941600	Flanking Active TSS	HepG2	liver
26	chr1:159941200-159942600	Strong transcription	Fetal Stomach	stomach
27	chr1:159941400-159941600	Enhancers	Placenta	Placenta
28	chr1:159941400-159941600	Enhancers	Small Intestine	intestine
29	chr1:159941400-159941800	Weak transcription	Gastric	stomach

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