Variant report

Variant	rs67918486
Chromosome Location	chr1:159950912-159950913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159914741..159917629-chr1:159949872..159952266,2	K562	blood:
2	chr1:159947758..159952541-chr1:159952979..159956390,5	K562	blood:
3	chr1:159948553..159951043-chr1:159956988..159959245,3	K562	blood:
4	chr1:159950154..159952541-chr1:159953471..159956390,2	K562	blood:

Variant related genes	Relation type
ENSG00000085552	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4378200	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4656250	0.93[AMR][1000 genomes]
rs4656860	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4656861	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6427500	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159941600-159957800	Weak transcription	Right Atrium	heart
2	chr1:159942000-159951200	Weak transcription	Gastric	stomach
3	chr1:159942000-159951600	Weak transcription	Pancreas	Pancrea
4	chr1:159942200-159959400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:159943200-159951200	Weak transcription	Colonic Mucosa	Colon
6	chr1:159945800-159951200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:159946800-159952200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:159946800-159955200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:159947000-159953800	Strong transcription	NHEK	skin
10	chr1:159947200-159952400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:159947600-159955200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:159948200-159951000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:159948800-159951200	Weak transcription	Placenta	Placenta
14	chr1:159950000-159951800	Strong transcription	Fetal Intestine Small	intestine
15	chr1:159950000-159952000	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr1:159950200-159951200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:159950200-159951400	Weak transcription	Esophagus	oesophagus
18	chr1:159950600-159951400	Strong transcription	Fetal Stomach	stomach
19	chr1:159950600-159953200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:159950800-159951800	Strong transcription	Stomach Mucosa	stomach

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