Variant report

Variant	rs4656861
Chromosome Location	chr1:159951592-159951593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159914741..159917629-chr1:159949872..159952266,2	K562	blood:
2	chr1:159947758..159952541-chr1:159952979..159956390,5	K562	blood:
3	chr1:159951389..159951919-chr1:160047563..160048091,2	K562	blood:
4	chr1:159950154..159952541-chr1:159953471..159956390,2	K562	blood:
5	chr1:159900350..159903071-chr1:159951037..159953862,3	K562	blood:

Variant related genes	Relation type
ENSG00000085552	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4378200	0.90[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs4656248	1.00[JPT][hapmap]
rs4656250	0.89[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4656859	1.00[JPT][hapmap]
rs4656860	0.90[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs4656862	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6427500	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs67918486	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541727	1.00[JPT][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159941600-159957800	Weak transcription	Right Atrium	heart
2	chr1:159942000-159951600	Weak transcription	Pancreas	Pancrea
3	chr1:159942200-159959400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:159946800-159952200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:159946800-159955200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:159947000-159953800	Strong transcription	NHEK	skin
7	chr1:159947200-159952400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:159947600-159955200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:159950000-159951800	Strong transcription	Fetal Intestine Small	intestine
10	chr1:159950000-159952000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr1:159950600-159953200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:159950800-159951800	Strong transcription	Stomach Mucosa	stomach
13	chr1:159951000-159951800	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:159951000-159952200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:159951200-159951600	Genic enhancers	Duodenum Mucosa	Duodenum
16	chr1:159951200-159951600	Strong transcription	Gastric	stomach
17	chr1:159951200-159952000	Enhancers	Placenta	Placenta
18	chr1:159951200-159952000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr1:159951200-159952200	Strong transcription	Colonic Mucosa	Colon
20	chr1:159951400-159952200	Strong transcription	Esophagus	oesophagus
21	chr1:159951400-159952200	Genic enhancers	Fetal Stomach	stomach
22	chr1:159951400-159952200	Enhancers	Spleen	Spleen

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