Variant report

Variant	rs4392254
Chromosome Location	chr2:234479240-234479241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs4047262	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4281901	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4588184	1.00[AMR][1000 genomes]
rs55888324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56274731	1.00[AMR][1000 genomes]
rs56306918	1.00[AMR][1000 genomes]
rs56317380	1.00[AMR][1000 genomes]
rs57285092	1.00[AMR][1000 genomes]
rs58330864	1.00[AMR][1000 genomes]
rs58489211	1.00[AMR][1000 genomes]
rs58583213	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58864422	1.00[AMR][1000 genomes]
rs59543173	1.00[AMR][1000 genomes]
rs59954119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61376069	1.00[AMR][1000 genomes]
rs6726032	1.00[AMR][1000 genomes]
rs6734355	1.00[AMR][1000 genomes]
rs73995922	1.00[AMR][1000 genomes]
rs73995923	1.00[AMR][1000 genomes]
rs73995944	1.00[AMR][1000 genomes]
rs73995946	1.00[AMR][1000 genomes]
rs73995947	1.00[AMR][1000 genomes]
rs73995948	1.00[AMR][1000 genomes]
rs73995949	1.00[AMR][1000 genomes]
rs73995950	1.00[AMR][1000 genomes]
rs73995970	1.00[AMR][1000 genomes]
rs73995972	1.00[AMR][1000 genomes]
rs73995973	1.00[AMR][1000 genomes]
rs73995974	1.00[AMR][1000 genomes]
rs73995980	1.00[AMR][1000 genomes]
rs73996001	1.00[AMR][1000 genomes]
rs73996105	1.00[AMR][1000 genomes]
rs73996107	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73996118	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73996119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73996120	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73996121	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73996124	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73996138	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73997606	1.00[AMR][1000 genomes]
rs73997607	1.00[AMR][1000 genomes]
rs73997608	1.00[AMR][1000 genomes]
rs73997611	1.00[AMR][1000 genomes]
rs73997612	1.00[AMR][1000 genomes]
rs73997630	1.00[AMR][1000 genomes]
rs73997631	1.00[AMR][1000 genomes]
rs73997633	1.00[AMR][1000 genomes]
rs73997637	1.00[AMR][1000 genomes]
rs73997638	1.00[AMR][1000 genomes]
rs745154	1.00[AMR][1000 genomes]
rs7580191	1.00[AMR][1000 genomes]
rs7584192	1.00[AMR][1000 genomes]
rs7593807	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv876013	chr2:234338227-234579915	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv428072	chr2:234393609-234624769	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv519876	chr2:234466843-234493048	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234475600-234480000	Weak transcription	A549	lung

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