Variant report

Variant	rs4392441
Chromosome Location	chr3:48077701-48077702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1013431	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10446426	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1060407	0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs1061003	0.81[ASN][1000 genomes]
rs11130152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130154	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130155	0.83[CEU][hapmap];0.93[GIH][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1137524	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11707679	0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs11710866	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11711129	0.86[EUR][1000 genomes]
rs11714518	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720151	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11924107	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12486714	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12493348	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13074973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13075457	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13075795	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13080997	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13081463	0.86[EUR][1000 genomes]
rs13085054	0.83[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs13089844	0.81[EUR][1000 genomes]
rs13093830	0.87[EUR][1000 genomes]
rs1530646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1550914	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1684942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17290490	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs184388	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2034963	0.80[EUR][1000 genomes]
rs2053767	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2121754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2166770	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2166772	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2361683	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2361684	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2631721	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28637561	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2882668	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs319681	0.83[EUR][1000 genomes]
rs319682	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs319684	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs319685	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs319686	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs319687	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs319688	0.83[EUR][1000 genomes]
rs319689	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs319690	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs319691	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs319692	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs319693	0.85[CEU][hapmap];0.88[JPT][hapmap];0.94[TSI][hapmap]
rs319694	0.84[ASW][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs319695	0.83[CHB][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs319696	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34025851	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34597784	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34750113	0.87[EUR][1000 genomes]
rs35199727	0.87[EUR][1000 genomes]
rs35314534	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35689209	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3732529	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4293721	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4296617	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4599334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858810	0.96[CEU][hapmap]
rs4858871	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858876	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858880	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4858881	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4858882	0.87[EUR][1000 genomes]
rs4858887	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5012971	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56067795	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60446735	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62260830	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6442090	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6442091	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6442094	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6442096	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6442099	0.80[EUR][1000 genomes]
rs6442101	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6442102	0.96[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6763824	0.83[ASW][hapmap];0.84[CEU][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap]
rs6766641	0.86[EUR][1000 genomes]
rs6768318	0.87[EUR][1000 genomes]
rs6770467	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770477	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6772396	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6773208	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6777081	0.83[EUR][1000 genomes]
rs6783629	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6791834	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6803741	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6806820	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7374482	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7374516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7426976	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7427418	0.89[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7427648	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7430879	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7430913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7618163	0.84[EUR][1000 genomes]
rs7619882	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7620736	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7627645	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7642590	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7649981	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7651237	0.81[EUR][1000 genomes]
rs7653368	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs777014	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs777015	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs777017	0.87[EUR][1000 genomes]
rs796566	0.96[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs800762	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs810334	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs936428	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9811277	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9812875	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9814961	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9825114	0.96[CEU][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs9828959	0.90[EUR][1000 genomes]
rs9842649	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9846062	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9854454	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9860485	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9862913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529989	chr3:47909480-48301481	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1001056	chr3:47912342-48223849	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1835684	chr3:47912703-48123540	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv1827272	chr3:47912703-48260968	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1009243	chr3:47935331-48340448	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv536562	chr3:47935331-48340448	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv1012828	chr3:47996472-48192862	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv1002067	chr3:47996472-48326518	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv876760	chr3:48019258-48197614	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv834681	chr3:48032000-48181775	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1004557	chr3:48056534-48256694	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs4392441	NME6	cis	Esophagus Muscularis	GTEx
rs4392441	SMARCC1	cis	cerebellum	SCAN
rs4392441	MRPS18AP1	cis	Nerve Tibial	GTEx
rs4392441	ZNF589	cis	Nerve Tibial	GTEx
rs4392441	CDC25A	cis	Muscle Skeletal	GTEx
rs4392441	CDC25A	cis	cerebellum	SCAN
rs4392441	ZNF589	cis	Lymphoblastoid	GTEx
rs4392441	CDC25A	cis	Thyroid	GTEx
rs4392441	ZNF589	cis	Artery Tibial	GTEx
rs4392441	HYAL2	cis	cerebellum	SCAN
rs4392441	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs4392441	MRPS18AP1	cis	lung	GTEx
rs4392441	ALS2CL	cis	parietal	SCAN
rs4392441	ZNF589	cis	cerebellum	SCAN
rs4392441	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs4392441	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs4392441	MRPS18AP1	cis	Artery Tibial	GTEx
rs4392441	MRPS18AP1	cis	Thyroid	GTEx
rs4392441	ZNF589	cis	parietal	SCAN
rs4392441	GNAI2	cis	parietal	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48051200-48128000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:48058400-48082400	Weak transcription	Spleen	Spleen
3	chr3:48058800-48080600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:48059200-48080600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:48059600-48128800	Weak transcription	Primary T cells from cord blood	blood
6	chr3:48059800-48090800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:48059800-48093600	Weak transcription	Gastric	stomach
8	chr3:48060800-48088800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:48060800-48089400	Weak transcription	Dnd41	blood
10	chr3:48064400-48128800	Weak transcription	Esophagus	oesophagus
11	chr3:48065200-48080600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:48069000-48080800	Weak transcription	Fetal Kidney	kidney
13	chr3:48071400-48080400	Weak transcription	Fetal Intestine Small	intestine
14	chr3:48071800-48081600	Enhancers	Fetal Heart	heart
15	chr3:48072600-48078200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:48073200-48078200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:48073400-48077800	Weak transcription	Fetal Stomach	stomach
18	chr3:48073400-48081800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:48074200-48078600	Enhancers	Brain Hippocampus Middle	brain
20	chr3:48074200-48078800	Enhancers	Colon Smooth Muscle	Colon
21	chr3:48074800-48079200	Weak transcription	A549	lung
22	chr3:48074800-48105400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:48075000-48078200	Enhancers	Right Atrium	heart
24	chr3:48075000-48078400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:48075800-48078200	Enhancers	Left Ventricle	heart
26	chr3:48075800-48080400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:48075800-48080400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:48075800-48080400	Weak transcription	Ovary	ovary
29	chr3:48075800-48080800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:48075800-48080800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:48075800-48102600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:48076000-48079400	Weak transcription	Liver	Liver
33	chr3:48076000-48080000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:48076000-48080600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:48076000-48080600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:48076200-48077800	Weak transcription	Small Intestine	intestine
37	chr3:48076200-48077800	Weak transcription	HSMMtube	muscle
38	chr3:48076200-48079800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:48076200-48080000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:48076200-48080200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:48076200-48080200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:48076200-48080200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:48076200-48080200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:48076200-48080200	Weak transcription	HSMM	muscle
45	chr3:48076200-48080200	Weak transcription	K562	blood
46	chr3:48076200-48080400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr3:48076200-48080400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:48076200-48080400	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:48076200-48080400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:48076200-48080400	Weak transcription	Stomach Mucosa	stomach

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