Variant report

Variant	rs4400627
Chromosome Location	chr1:85235535-85235536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10127586	1.00[ASN][1000 genomes]
rs10127852	1.00[ASN][1000 genomes]
rs12133105	1.00[ASN][1000 genomes]
rs13374798	1.00[ASN][1000 genomes]
rs1359607	1.00[ASN][1000 genomes]
rs2389787	1.00[ASN][1000 genomes]
rs2389788	1.00[ASN][1000 genomes]
rs35604148	1.00[ASN][1000 genomes]
rs4265445	1.00[ASN][1000 genomes]
rs72717001	1.00[ASN][1000 genomes]
rs72717002	1.00[ASN][1000 genomes]
rs72718706	1.00[ASN][1000 genomes]
rs72718707	1.00[ASN][1000 genomes]
rs72718708	1.00[ASN][1000 genomes]
rs818523	1.00[AFR][1000 genomes]
rs942683	1.00[ASN][1000 genomes]
rs942684	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947190	chr1:85229432-85235799	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85228800-85238200	Weak transcription	Stomach Mucosa	stomach
2	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:85232600-85237800	Weak transcription	Fetal Heart	heart
4	chr1:85234800-85237600	Weak transcription	Fetal Brain Male	brain
5	chr1:85235400-85235600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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