The 2.0 version of rSNPBase

Variant report

Variant rs2389787
Chromosome Location chr1:85321627-85321628
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85289400-85330800 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:85313000-85332800 Weak transcription HUES64 Cell Line embryonic stem cell
3 chr1:85313600-85330600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:85313600-85357200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:85314000-85330400 Weak transcription Pancreas Pancrea
6 chr1:85314600-85328400 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:85315200-85322000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:85315600-85336400 Weak transcription Right Ventricle heart
9 chr1:85317600-85322200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:85319000-85322000 Enhancers NHDF-Ad bronchial
11 chr1:85319400-85321800 Enhancers GM12878-XiMat blood
12 chr1:85319400-85322000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr1:85319400-85322000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr1:85319400-85322000 Enhancers HUVEC blood vessel
15 chr1:85319400-85336400 Weak transcription H1 Cell Line embryonic stem cell
16 chr1:85319600-85321800 Enhancers Primary T cells from cord blood blood
17 chr1:85319600-85322000 Enhancers Muscle Satellite Cultured Cells --
18 chr1:85319600-85323200 Enhancers Fetal Heart heart
19 chr1:85320000-85321800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:85320000-85322000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:85320400-85322200 Enhancers Left Ventricle heart
22 chr1:85320600-85322000 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:85320600-85322200 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr1:85320600-85354800 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr1:85320800-85322000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:85320800-85323200 Enhancers Fetal Brain Male brain
27 chr1:85320800-85324200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:85320800-85326000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:85320800-85327200 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr1:85321000-85322000 Enhancers Primary hematopoietic stem cells short term culture blood
31 chr1:85321000-85322200 Weak transcription NHLF lung
32 chr1:85321000-85324400 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:85321000-85324400 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr1:85321000-85327000 Weak transcription Primary T helper cells fromperipheralblood blood
35 chr1:85321000-85342800 Weak transcription Right Atrium heart
36 chr1:85321200-85324200 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:85321400-85321800 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:85321400-85321800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:85321400-85321800 Genic enhancers NHEK skin
40 chr1:85321400-85322000 Genic enhancers HMEC breast
41 chr1:85321400-85324200 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr1:85321400-85324200 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr1:85321600-85322000 Weak transcription Thymus Thymus
44 chr1:85321600-85322400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:85321600-85322400 Enhancers Fetal Lung lung
46 chr1:85321600-85327000 Weak transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015