The 2.0 version of rSNPBase

Variant report

Variant rs4617419
Chromosome Location chr1:85322053-85322054
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85289400-85330800 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:85313000-85332800 Weak transcription HUES64 Cell Line embryonic stem cell
3 chr1:85313600-85330600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:85313600-85357200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:85314000-85330400 Weak transcription Pancreas Pancrea
6 chr1:85314600-85328400 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:85315600-85336400 Weak transcription Right Ventricle heart
8 chr1:85317600-85322200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
9 chr1:85319400-85336400 Weak transcription H1 Cell Line embryonic stem cell
10 chr1:85319600-85323200 Enhancers Fetal Heart heart
11 chr1:85320400-85322200 Enhancers Left Ventricle heart
12 chr1:85320600-85322200 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:85320600-85354800 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr1:85320800-85323200 Enhancers Fetal Brain Male brain
15 chr1:85320800-85324200 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr1:85320800-85326000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:85320800-85327200 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr1:85321000-85322200 Weak transcription NHLF lung
19 chr1:85321000-85324400 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr1:85321000-85324400 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr1:85321000-85327000 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr1:85321000-85342800 Weak transcription Right Atrium heart
23 chr1:85321200-85324200 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:85321400-85324200 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr1:85321400-85324200 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:85321600-85322400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:85321600-85322400 Enhancers Fetal Lung lung
28 chr1:85321600-85327000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr1:85321800-85322200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:85321800-85322200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:85321800-85322200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:85321800-85323800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:85321800-85324200 Weak transcription GM12878-XiMat blood
34 chr1:85321800-85324200 Weak transcription NHEK skin
35 chr1:85321800-85332400 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr1:85322000-85322800 Enhancers Placenta Amnion Placenta Amnion
37 chr1:85322000-85323800 Strong transcription HMEC breast
38 chr1:85322000-85324200 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr1:85322000-85325000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015