Variant report

Variant	rs4400921
Chromosome Location	chr13:93869239-93869240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93866502..93868671-chr13:93869207..93871495,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1328366	0.83[GIH][hapmap]
rs17267523	0.83[LWK][hapmap]
rs17645969	0.84[CEU][hapmap];0.96[GIH][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs17645998	0.84[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs17702471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004191	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2209880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963718	0.81[EUR][1000 genomes]
rs72633947	0.81[EUR][1000 genomes]
rs8181846	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561275	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9561276	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561281	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832682	chr13:93700861-93874801	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93867800-93869400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr13:93868200-93870800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr13:93868200-93872400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:93868400-93870600	Enhancers	HepG2	liver
5	chr13:93868600-93870600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr13:93868800-93869800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:93868800-93869800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:93868800-93869800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:93868800-93870000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:93868800-93871200	Enhancers	HMEC	breast
11	chr13:93868800-93876800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:93869000-93869400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:93869000-93870000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:93869000-93871000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr13:93869000-93872400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:93869000-93875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:93869000-93878200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr13:93869200-93869800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr13:93869200-93870000	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr13:93869200-93870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr13:93869200-93870600	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr13:93869200-93871400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr13:93869200-93875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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