Variant report

Variant	rs72633947
Chromosome Location	chr13:93880232-93880233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:93865733..93868026-chr13:93879427..93882224,2	K562	blood:
2	chr13:93871860..93874254-chr13:93879384..93881257,3	K562	blood:
3	chr13:93879207..93881575-chr4:6694690..6696202,2	MCF-7	breast:
4	chr13:93879582..93881413-chr13:94446291..94448789,3	MCF-7	breast:
5	chr13:93879341..93882111-chr13:94847801..94850206,2	MCF-7	breast:
6	chr13:93814948..93816850-chr13:93879832..93881528,2	MCF-7	breast:
7	chr13:93879737..93882556-chr13:93905136..93907942,2	K562	blood:
8	chr13:93851878..93853804-chr13:93880087..93882810,2	K562	blood:
9	chr13:93879154..93880951-chr13:93922724..93924964,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163993	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1328370	0.81[EUR][1000 genomes]
rs17188802	0.81[EUR][1000 genomes]
rs17267523	0.82[EUR][1000 genomes]
rs17645969	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17645998	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17702471	0.85[EUR][1000 genomes]
rs2209880	0.85[EUR][1000 genomes]
rs4400921	0.81[EUR][1000 genomes]
rs61963718	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61963740	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61963741	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61963744	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61963746	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61963747	0.82[EUR][1000 genomes]
rs61963748	0.81[EUR][1000 genomes]
rs9561281	0.84[EUR][1000 genomes]
rs970617	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93878000-93881600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr13:93878000-93882800	Active TSS	Aorta	Aorta
3	chr13:93878200-93880600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr13:93878200-93881000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr13:93878200-93881600	Active TSS	Colon Smooth Muscle	Colon
6	chr13:93878200-93881600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr13:93878200-93882200	Active TSS	Fetal Brain Male	brain
8	chr13:93878200-93882800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr13:93878400-93881400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:93878400-93881400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:93878400-93881400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:93878400-93881400	Active TSS	Rectal Smooth Muscle	rectum
13	chr13:93878400-93881600	Active TSS	Brain Anterior Caudate	brain
14	chr13:93878400-93881600	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr13:93878400-93882000	Active TSS	Ovary	ovary
16	chr13:93878400-93882400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:93878400-93882600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:93878600-93881000	Active TSS	Muscle Satellite Cultured Cells	--
19	chr13:93878600-93881000	Bivalent/Poised TSS	Psoas Muscle	Psoas
20	chr13:93878600-93881200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:93878600-93881200	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr13:93878600-93881200	Active TSS	Brain Angular Gyrus	brain
23	chr13:93878600-93881400	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr13:93878600-93881600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:93878600-93881600	Active TSS	Brain Cingulate Gyrus	brain
26	chr13:93878600-93881600	Active TSS	HSMM	muscle
27	chr13:93878600-93881800	Active TSS	NHDF-Ad	bronchial
28	chr13:93878600-93881800	Active TSS	Osteobl	bone
29	chr13:93878600-93882000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr13:93878600-93882000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:93878600-93882000	Active TSS	Fetal Intestine Large	intestine
32	chr13:93878600-93882200	Active TSS	Brain Germinal Matrix	brain
33	chr13:93878600-93882400	Active TSS	NHLF	lung
34	chr13:93878800-93880600	Active TSS	Liver	Liver
35	chr13:93878800-93880800	Bivalent/Poised TSS	K562	blood
36	chr13:93878800-93881000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
37	chr13:93878800-93881000	Active TSS	Fetal Heart	heart
38	chr13:93878800-93881200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr13:93878800-93881200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:93878800-93881200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr13:93878800-93881200	Bivalent/Poised TSS	Fetal Thymus	thymus
42	chr13:93878800-93881200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
43	chr13:93878800-93881400	Active TSS	H9 Cell Line	embryonic stem cell
44	chr13:93878800-93881400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:93878800-93881400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr13:93878800-93881600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr13:93878800-93881600	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr13:93878800-93881600	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr13:93878800-93881600	Active TSS	Fetal Intestine Small	intestine
50	chr13:93878800-93881600	Active TSS	HSMMtube	muscle

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