Variant report

Variant	rs61963718
Chromosome Location	chr13:93881410-93881411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:93865733..93868026-chr13:93879427..93882224,2	K562	blood:
2	chr13:93879207..93881575-chr4:6694690..6696202,2	MCF-7	breast:
3	chr13:93879582..93881413-chr13:94446291..94448789,3	MCF-7	breast:
4	chr13:93879341..93882111-chr13:94847801..94850206,2	MCF-7	breast:
5	chr13:93814948..93816850-chr13:93879832..93881528,2	MCF-7	breast:
6	chr13:93879737..93882556-chr13:93905136..93907942,2	K562	blood:
7	chr13:93880775..93882507-chr13:93894368..93896600,2	MCF-7	breast:
8	chr13:93851878..93853804-chr13:93880087..93882810,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163993	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1008993	0.80[EUR][1000 genomes]
rs1328370	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17188802	0.83[EUR][1000 genomes]
rs17267523	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17645969	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17645998	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17702471	0.85[EUR][1000 genomes]
rs2209880	0.85[EUR][1000 genomes]
rs4400921	0.81[EUR][1000 genomes]
rs61963740	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61963741	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61963744	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61963746	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61963747	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61963748	0.83[EUR][1000 genomes]
rs72633947	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561281	0.84[EUR][1000 genomes]
rs970617	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93878000-93881600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr13:93878000-93882800	Active TSS	Aorta	Aorta
3	chr13:93878200-93881600	Active TSS	Colon Smooth Muscle	Colon
4	chr13:93878200-93881600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr13:93878200-93882200	Active TSS	Fetal Brain Male	brain
6	chr13:93878200-93882800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr13:93878400-93881600	Active TSS	Brain Anterior Caudate	brain
8	chr13:93878400-93881600	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr13:93878400-93882000	Active TSS	Ovary	ovary
10	chr13:93878400-93882400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:93878400-93882600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:93878600-93881600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:93878600-93881600	Active TSS	Brain Cingulate Gyrus	brain
14	chr13:93878600-93881600	Active TSS	HSMM	muscle
15	chr13:93878600-93881800	Active TSS	NHDF-Ad	bronchial
16	chr13:93878600-93881800	Active TSS	Osteobl	bone
17	chr13:93878600-93882000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:93878600-93882000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:93878600-93882000	Active TSS	Fetal Intestine Large	intestine
20	chr13:93878600-93882200	Active TSS	Brain Germinal Matrix	brain
21	chr13:93878600-93882400	Active TSS	NHLF	lung
22	chr13:93878800-93881600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:93878800-93881600	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr13:93878800-93881600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr13:93878800-93881600	Active TSS	Fetal Intestine Small	intestine
26	chr13:93878800-93881600	Active TSS	HSMMtube	muscle
27	chr13:93878800-93881600	Active TSS	NH-A	brain
28	chr13:93878800-93881800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:93878800-93881800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr13:93878800-93881800	Active TSS	Fetal Lung	lung
31	chr13:93878800-93882200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:93878800-93882600	Active TSS	Fetal Kidney	kidney
33	chr13:93878800-93883200	Active TSS	Fetal Brain Female	brain
34	chr13:93879000-93881800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr13:93879000-93882000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:93879400-93881600	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr13:93879400-93881600	Active TSS	Stomach Smooth Muscle	stomach
38	chr13:93879600-93881600	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr13:93879600-93881800	Active TSS	H1 Cell Line	embryonic stem cell
40	chr13:93880200-93881600	Active TSS	Brain Hippocampus Middle	brain
41	chr13:93880800-93881600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr13:93881000-93881600	Active TSS	Fetal Muscle Leg	muscle
43	chr13:93881000-93881800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
44	chr13:93881000-93881800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr13:93881000-93881800	Active TSS	HepG2	liver
46	chr13:93881000-93882400	Active TSS	Fetal Stomach	stomach
47	chr13:93881000-93883000	Active TSS	A549	lung
48	chr13:93881000-93883200	Flanking Active TSS	Liver	Liver
49	chr13:93881000-93886000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:93881200-93881600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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