Variant report
| Variant | rs4405363 |
|---|---|
| Chromosome Location | chr12:49290152-49290153 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:49258196..49260746-chr12:49288714..49290474,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000172602 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:47)
| rs_ID | r2[population] |
|---|---|
| rs11168680 | 1.00[ASN][1000 genomes] |
| rs11168690 | 1.00[ASN][1000 genomes] |
| rs11168691 | 1.00[ASN][1000 genomes] |
| rs11168692 | 1.00[ASN][1000 genomes] |
| rs11168693 | 1.00[ASN][1000 genomes] |
| rs11168694 | 1.00[ASN][1000 genomes] |
| rs11168695 | 1.00[ASN][1000 genomes] |
| rs11168699 | 1.00[ASN][1000 genomes] |
| rs11168700 | 1.00[ASN][1000 genomes] |
| rs11168701 | 1.00[ASN][1000 genomes] |
| rs11168708 | 1.00[ASN][1000 genomes] |
| rs11168715 | 1.00[ASN][1000 genomes] |
| rs11168717 | 1.00[ASN][1000 genomes] |
| rs11168718 | 1.00[ASN][1000 genomes] |
| rs11168719 | 1.00[ASN][1000 genomes] |
| rs11168722 | 1.00[ASN][1000 genomes] |
| rs11168727 | 1.00[ASN][1000 genomes] |
| rs11168781 | 1.00[ASN][1000 genomes] |
| rs11837643 | 1.00[ASN][1000 genomes] |
| rs12366919 | 1.00[ASN][1000 genomes] |
| rs12369279 | 1.00[ASN][1000 genomes] |
| rs17123362 | 1.00[ASN][1000 genomes] |
| rs1895994 | 1.00[ASN][1000 genomes] |
| rs2409084 | 1.00[ASN][1000 genomes] |
| rs3013 | 1.00[ASN][1000 genomes] |
| rs4132370 | 1.00[ASN][1000 genomes] |
| rs56182935 | 1.00[ASN][1000 genomes] |
| rs61942047 | 1.00[ASN][1000 genomes] |
| rs61942048 | 1.00[ASN][1000 genomes] |
| rs61942049 | 1.00[ASN][1000 genomes] |
| rs61942051 | 1.00[ASN][1000 genomes] |
| rs61942058 | 1.00[ASN][1000 genomes] |
| rs61942059 | 1.00[ASN][1000 genomes] |
| rs61943193 | 1.00[ASN][1000 genomes] |
| rs61943194 | 1.00[ASN][1000 genomes] |
| rs6580694 | 1.00[ASN][1000 genomes] |
| rs7138342 | 1.00[ASN][1000 genomes] |
| rs7295027 | 1.00[ASN][1000 genomes] |
| rs7295138 | 1.00[ASN][1000 genomes] |
| rs7296987 | 1.00[ASN][1000 genomes] |
| rs7303113 | 1.00[ASN][1000 genomes] |
| rs73105786 | 1.00[ASN][1000 genomes] |
| rs74088163 | 1.00[ASN][1000 genomes] |
| rs7964801 | 1.00[ASN][1000 genomes] |
| rs7975102 | 1.00[ASN][1000 genomes] |
| rs7977935 | 1.00[ASN][1000 genomes] |
| rs953673 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832404 | chr12:49258560-49458555 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
