Variant report

Variant rs17123362
Chromosome Location chr12:49255964-49255965
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:49246600-49258600 Weak transcription Small Intestine intestine
2 chr12:49246800-49256400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr12:49247200-49256000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr12:49247200-49256600 Weak transcription Primary T cells from cord blood blood
5 chr12:49247200-49257000 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr12:49247200-49257800 Weak transcription Stomach Mucosa stomach
7 chr12:49247200-49258000 Weak transcription Brain Substantia Nigra brain
8 chr12:49247200-49258600 Weak transcription Esophagus oesophagus
9 chr12:49247200-49258600 Weak transcription Right Ventricle heart
10 chr12:49247200-49258800 Weak transcription Right Atrium heart
11 chr12:49247200-49259000 Weak transcription Ovary ovary
12 chr12:49250000-49256200 Strong transcription iPS-18 Cell Line embryonic stem cell
13 chr12:49251200-49256000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr12:49251200-49256000 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr12:49251200-49256400 Strong transcription iPS-20b Cell Line embryonic stem cell
16 chr12:49251200-49256600 Strong transcription H1 Cell Line embryonic stem cell
17 chr12:49251200-49256600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr12:49251600-49257800 Weak transcription Spleen Spleen
19 chr12:49251800-49257400 Weak transcription Primary B cells from peripheral blood blood
20 chr12:49252000-49257400 Weak transcription GM12878-XiMat blood
21 chr12:49252200-49256200 Weak transcription Brain Hippocampus Middle brain
22 chr12:49252400-49257800 Weak transcription Duodenum Mucosa Duodenum
23 chr12:49253400-49256200 Strong transcription Fetal Stomach stomach
24 chr12:49253600-49257000 Strong transcription HUES48 Cell Line embryonic stem cell
25 chr12:49253800-49258200 Weak transcription HepG2 liver
26 chr12:49254400-49256000 Strong transcription HUES6 Cell Line embryonic stem cell
27 chr12:49254400-49256400 Strong transcription iPS-15b Cell Line embryonic stem cell
28 chr12:49254600-49256000 Strong transcription H9 Cell Line embryonic stem cell
29 chr12:49254600-49256000 Genic enhancers Brain Anterior Caudate brain
30 chr12:49254600-49256200 Enhancers Fetal Brain Male brain
31 chr12:49254600-49256600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr12:49254800-49256000 Strong transcription Primary B cells from cord blood blood
33 chr12:49254800-49256000 Transcr. at gene 5' and 3' Brain Dorsolateral Prefrontal Cortex brain
34 chr12:49254800-49257400 Genic enhancers Liver Liver
35 chr12:49254800-49259000 Transcr. at gene 5' and 3' A549 lung
36 chr12:49255000-49256000 Transcr. at gene 5' and 3' Fetal Brain Female brain
37 chr12:49255200-49256000 Transcr. at gene 5' and 3' Brain Germinal Matrix brain
38 chr12:49255200-49256000 Strong transcription Lung lung
39 chr12:49255400-49256600 Strong transcription Gastric stomach
40 chr12:49255400-49256800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
41 chr12:49255400-49257200 Weak transcription Adipose Nuclei Adipose
42 chr12:49255400-49257800 Weak transcription Fetal Intestine Large intestine
43 chr12:49255400-49258000 Weak transcription Pancreas Pancrea
44 chr12:49255600-49256000 Transcr. at gene 5' and 3' Brain Inferior Temporal Lobe brain
45 chr12:49255600-49256200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
46 chr12:49255600-49256200 Flanking Active TSS Brain Cingulate Gyrus brain
47 chr12:49255600-49256400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
48 chr12:49255600-49257800 Weak transcription Fetal Intestine Small intestine
49 chr12:49255800-49256000 Transcr. at gene 5' and 3' hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr12:49255800-49256200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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