Variant report

Variant	rs11168708
Chromosome Location	chr12:49129449-49129450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:49109220..49112164-chr12:49127938..49130010,2	K562	blood:
2	chr12:49129164..49131516-chr12:49139645..49141485,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129315	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10875851	1.00[ASN][1000 genomes]
rs11168620	1.00[ASN][1000 genomes]
rs11168659	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11168660	1.00[ASN][1000 genomes]
rs11168661	1.00[ASN][1000 genomes]
rs11168664	1.00[ASN][1000 genomes]
rs11168667	1.00[ASN][1000 genomes]
rs11168680	1.00[ASN][1000 genomes]
rs11168690	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168691	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168692	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168693	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168694	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168695	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168699	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168700	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168701	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168715	1.00[ASN][1000 genomes]
rs11168717	1.00[ASN][1000 genomes]
rs11168718	1.00[ASN][1000 genomes]
rs11168719	1.00[ASN][1000 genomes]
rs11168722	1.00[ASN][1000 genomes]
rs11168727	1.00[ASN][1000 genomes]
rs11168781	1.00[ASN][1000 genomes]
rs11832160	1.00[ASN][1000 genomes]
rs11837643	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366919	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369279	1.00[ASN][1000 genomes]
rs17123362	1.00[ASN][1000 genomes]
rs17834622	1.00[ASN][1000 genomes]
rs1895994	1.00[ASN][1000 genomes]
rs2409084	1.00[ASN][1000 genomes]
rs3013	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132370	1.00[ASN][1000 genomes]
rs4405363	1.00[ASN][1000 genomes]
rs55644947	1.00[ASN][1000 genomes]
rs56182935	1.00[ASN][1000 genomes]
rs61942012	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61942013	1.00[ASN][1000 genomes]
rs61942014	1.00[ASN][1000 genomes]
rs61942015	1.00[ASN][1000 genomes]
rs61942016	1.00[ASN][1000 genomes]
rs61942018	1.00[ASN][1000 genomes]
rs61942047	1.00[ASN][1000 genomes]
rs61942048	1.00[ASN][1000 genomes]
rs61942049	1.00[ASN][1000 genomes]
rs61942051	1.00[ASN][1000 genomes]
rs61942052	0.87[AFR][1000 genomes]
rs61942058	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61942059	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61943193	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61943194	1.00[ASN][1000 genomes]
rs6580694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7138342	1.00[ASN][1000 genomes]
rs7294389	1.00[ASN][1000 genomes]
rs7295027	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7295138	1.00[ASN][1000 genomes]
rs7296987	1.00[ASN][1000 genomes]
rs7303113	1.00[ASN][1000 genomes]
rs73105786	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74088163	1.00[ASN][1000 genomes]
rs7486636	1.00[ASN][1000 genomes]
rs7964801	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966343	1.00[ASN][1000 genomes]
rs7967175	1.00[ASN][1000 genomes]
rs7967542	1.00[ASN][1000 genomes]
rs7973954	1.00[ASN][1000 genomes]
rs7975102	1.00[ASN][1000 genomes]
rs7977935	1.00[ASN][1000 genomes]
rs7979508	1.00[ASN][1000 genomes]
rs953673	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332169	chr12:49005807-49150691	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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