Variant report

Variant	rs55644947
Chromosome Location	chr12:48949458-48949459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10875851	1.00[ASN][1000 genomes]
rs11168620	1.00[ASN][1000 genomes]
rs11168659	1.00[ASN][1000 genomes]
rs11168660	1.00[ASN][1000 genomes]
rs11168661	1.00[ASN][1000 genomes]
rs11168664	1.00[ASN][1000 genomes]
rs11168667	1.00[ASN][1000 genomes]
rs11168680	1.00[ASN][1000 genomes]
rs11168690	1.00[ASN][1000 genomes]
rs11168691	1.00[ASN][1000 genomes]
rs11168692	1.00[ASN][1000 genomes]
rs11168693	1.00[ASN][1000 genomes]
rs11168694	1.00[ASN][1000 genomes]
rs11168695	1.00[ASN][1000 genomes]
rs11168699	1.00[ASN][1000 genomes]
rs11168700	1.00[ASN][1000 genomes]
rs11168701	1.00[ASN][1000 genomes]
rs11168708	1.00[ASN][1000 genomes]
rs11168715	1.00[ASN][1000 genomes]
rs11168717	1.00[ASN][1000 genomes]
rs11168718	1.00[ASN][1000 genomes]
rs11168719	1.00[ASN][1000 genomes]
rs11168722	1.00[ASN][1000 genomes]
rs11168727	1.00[ASN][1000 genomes]
rs11832160	1.00[ASN][1000 genomes]
rs11837643	1.00[ASN][1000 genomes]
rs12366919	1.00[ASN][1000 genomes]
rs12369279	1.00[ASN][1000 genomes]
rs17834622	1.00[ASN][1000 genomes]
rs1895994	1.00[ASN][1000 genomes]
rs2409084	1.00[ASN][1000 genomes]
rs3013	1.00[ASN][1000 genomes]
rs4132370	1.00[ASN][1000 genomes]
rs56182935	1.00[ASN][1000 genomes]
rs61942012	1.00[ASN][1000 genomes]
rs61942013	1.00[ASN][1000 genomes]
rs61942014	1.00[ASN][1000 genomes]
rs61942015	1.00[ASN][1000 genomes]
rs61942016	1.00[ASN][1000 genomes]
rs61942018	1.00[ASN][1000 genomes]
rs61942047	1.00[ASN][1000 genomes]
rs61942048	1.00[ASN][1000 genomes]
rs61942049	1.00[ASN][1000 genomes]
rs61942051	1.00[ASN][1000 genomes]
rs61942058	1.00[ASN][1000 genomes]
rs61942059	1.00[ASN][1000 genomes]
rs61943193	1.00[ASN][1000 genomes]
rs61943194	1.00[ASN][1000 genomes]
rs6580694	1.00[ASN][1000 genomes]
rs7138342	1.00[ASN][1000 genomes]
rs7294389	1.00[ASN][1000 genomes]
rs7295027	1.00[ASN][1000 genomes]
rs7295138	1.00[ASN][1000 genomes]
rs7296987	1.00[ASN][1000 genomes]
rs7303113	1.00[ASN][1000 genomes]
rs73105786	1.00[ASN][1000 genomes]
rs74088163	1.00[ASN][1000 genomes]
rs7486636	1.00[ASN][1000 genomes]
rs7964801	1.00[ASN][1000 genomes]
rs7966343	1.00[ASN][1000 genomes]
rs7967175	1.00[ASN][1000 genomes]
rs7967542	1.00[ASN][1000 genomes]
rs7973954	1.00[ASN][1000 genomes]
rs7975102	1.00[ASN][1000 genomes]
rs7977935	1.00[ASN][1000 genomes]
rs7979508	1.00[ASN][1000 genomes]
rs953673	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1047600	chr12:48927514-48954225	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1048307	chr12:48927514-48958949	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48948200-48949600	Weak transcription	K562	blood
2	chr12:48948200-48949800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:48948800-48950000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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