Variant report

Variant	rs4412777
Chromosome Location	chr11:86119396-86119397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86117387..86119595-chr11:86121640..86124123,2	K562	blood:
2	chr11:86118884..86121555-chr11:86121901..86123435,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1056194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898484	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11234632	0.81[CEU][hapmap]
rs11601917	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12417575	0.81[CEU][hapmap]
rs1563682	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2125362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2125363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3741004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4544026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944581	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944583	0.88[ASN][1000 genomes]
rs616794	0.80[YRI][hapmap]
rs641541	0.81[YRI][hapmap]
rs653715	0.80[YRI][hapmap]
rs6592295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592296	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7108055	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7109853	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7122239	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7122479	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7123773	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7941054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946332	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86107200-86122400	Weak transcription	Aorta	Aorta
3	chr11:86108200-86127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86111200-86124200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
7	chr11:86118200-86124800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
9	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
12	chr11:86119000-86126200	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:86119000-86127200	Weak transcription	Gastric	stomach
14	chr11:86119200-86119400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:86119200-86125800	Weak transcription	Brain Cingulate Gyrus	brain

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