Variant report

Variant	rs4944575
Chromosome Location	chr11:86121937-86121938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86117387..86119595-chr11:86121640..86124123,2	K562	blood:
2	chr11:86118884..86121555-chr11:86121901..86123435,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1056194	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898483	0.87[CHD][hapmap]
rs10898484	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11601917	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1563682	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.89[ASN][1000 genomes]
rs2125362	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2125363	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2446230	0.82[MEX][hapmap]
rs3741004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4412777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944580	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944581	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944583	0.88[ASN][1000 genomes]
rs601646	0.81[LWK][hapmap]
rs610790	0.82[MEX][hapmap]
rs611730	0.82[MEX][hapmap]
rs6592295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592296	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs660372	0.82[MEX][hapmap]
rs663208	0.80[LWK][hapmap]
rs664613	0.80[LWK][hapmap]
rs669325	0.80[LWK][hapmap]
rs7108055	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7109853	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[ASN][1000 genomes]
rs7122239	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[ASN][1000 genomes]
rs7122479	1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[MEX][hapmap];0.89[ASN][1000 genomes]
rs7123773	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.89[ASN][1000 genomes]
rs7936278	0.80[EUR][1000 genomes]
rs7941054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946332	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4944575	PRSS23	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86107200-86122400	Weak transcription	Aorta	Aorta
3	chr11:86108200-86127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86111200-86124200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
7	chr11:86118200-86124800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
9	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
12	chr11:86119000-86126200	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:86119000-86127200	Weak transcription	Gastric	stomach
14	chr11:86119200-86125800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:86119400-86122000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:86120600-86124000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:86121200-86127600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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